Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VYI69_RS20220 Genome accession   NZ_CP143576
Coordinates   4486280..4486915 (-) Length   211 a.a.
NCBI ID   WP_063033914.1    Uniprot ID   -
Organism   Pseudomonas yamanorum strain SFB8.6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4481280..4491915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI69_RS20190 (VYI69_20190) murB 4482394..4483413 (-) 1020 WP_330564430.1 UDP-N-acetylmuramate dehydrogenase -
  VYI69_RS20195 (VYI69_20195) - 4483410..4483874 (-) 465 WP_017475823.1 low molecular weight protein-tyrosine-phosphatase -
  VYI69_RS20200 (VYI69_20200) kdsB 4483874..4484638 (-) 765 WP_008434982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VYI69_RS20205 (VYI69_20205) - 4484635..4484820 (-) 186 WP_003174668.1 Trm112 family protein -
  VYI69_RS20210 (VYI69_20210) lpxK 4484845..4485855 (-) 1011 WP_330564431.1 tetraacyldisaccharide 4'-kinase -
  VYI69_RS20215 (VYI69_20215) - 4485855..4486283 (-) 429 WP_004371361.1 ExbD/TolR family protein -
  VYI69_RS20220 (VYI69_20220) exbB 4486280..4486915 (-) 636 WP_063033914.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VYI69_RS20225 (VYI69_20225) comA 4486947..4489238 (-) 2292 WP_330566048.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VYI69_RS20230 (VYI69_20230) - 4489386..4489901 (+) 516 WP_017475829.1 DUF2062 domain-containing protein -
  VYI69_RS20235 (VYI69_20235) - 4489905..4491275 (-) 1371 WP_330564432.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.02 Da        Isoelectric Point: 7.3613

>NTDB_id=929787 VYI69_RS20220 WP_063033914.1 4486280..4486915(-) (exbB) [Pseudomonas yamanorum strain SFB8.6]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPDHLLGQVWGWIKNKQLDKAKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=929787 VYI69_RS20220 WP_063033914.1 4486280..4486915(-) (exbB) [Pseudomonas yamanorum strain SFB8.6]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCACTCGGCATCATCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGTGTAACACCTGACCACCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGCAAAGCTCAAGGAACTGCGCGCCAATTCGCCCCTGGGTGAAATCCTCGCCGCCGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAGTTGGAGCGTTACAT
CAATGCCTTGGGCACCATTGCCGCCATGGCACCGTTGCTCGGCCTGCTCGGTACGGTGTTGGGCATGATCGATATCTTCA
GCTCCTTCATGGGCTCGGGCATGACCACCAACGCTGCGGTGCTGGCCGGTGGTATTTCCAAGGCCTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863