Detailed information NTG0929723

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: V1208_RS19985
• Genome accession: NZ_CP143562
• Coordinates: 4441560..4443080 (+)
• Length: 506 a.a.
• NCBI ID: WP_024712425.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzicola strain GD06
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4436560..4448080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V1208_RS19960 (V1208_19960)	-	4437639..4437875 (+)	237	Protein_3787	hypothetical protein	-
V1208_RS19970 (V1208_19970)	-	4438138..4440123 (-)	1986	WP_014504989.1	beta-N-acetylglucosaminidase domain-containing protein	-
V1208_RS19975 (V1208_19975)	-	4440737..4441111 (-)	375	WP_014504990.1	P-II family nitrogen regulator	-
V1208_RS19980 (V1208_19980)	-	4441265..4441543 (+)	279	WP_014504991.1	accessory factor UbiK family protein	-
V1208_RS19985 (V1208_19985)	comM	4441560..4443080 (+)	1521	WP_024712425.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
V1208_RS19995 (V1208_19995)	-	4443555..4444064 (+)	510	WP_014504993.1	lipocalin family protein	-
V1208_RS20000 (V1208_20000)	-	4444218..4444394 (-)	177	WP_010374782.1	hypothetical protein	-
V1208_RS20005 (V1208_20005)	-	4444777..4446324 (+)	1548	WP_014504995.1	EAL domain-containing protein	-
V1208_RS20010 (V1208_20010)	-	4446390..4447511 (-)	1122	WP_014504996.1	acyl-CoA desaturase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 54039.84 Da
• Isoelectric Point: 8.4400

>NTDB_id=929723 V1208_RS19985 WP_024712425.1 4441560..4443080(+) (comM) [Xanthomonas oryzae pv. oryzicola strain GD06]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLNLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVTARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide

• Length: 1521 bp

>NTDB_id=929723 V1208_RS19985 WP_024712425.1 4441560..4443080(+) (comM) [Xanthomonas oryzae pv. oryzicola strain GD06]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCAGCCGAATTGGCGGTGCAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGAATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTGGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TTTCCGGCCCCTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCACCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAACGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	56.917	100	0.569
comM	Haemophilus influenzae Rd KW20	55.382	100	0.559
comM	Glaesserella parasuis strain SC1401	54.438	100	0.545
comM	Vibrio campbellii strain DS40M4	54.348	100	0.543
comM	Legionella pneumophila str. Paris	51.911	98.221	0.51
comM	Legionella pneumophila strain ERS1305867	51.911	98.221	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.063	100	0.462