Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1M48_RS26385 Genome accession   NZ_CP143559
Coordinates   3532587..3534110 (-) Length   507 a.a.
NCBI ID   WP_005451005.1    Uniprot ID   A0A9X3RXA3
Organism   Vibrio harveyi strain WHSS0915     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3527587..3539110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1M48_RS26360 (V1M48_26360) - 3527922..3528908 (+) 987 WP_005450998.1 serine/threonine protein kinase -
  V1M48_RS26365 (V1M48_26365) - 3528943..3529545 (+) 603 WP_005451000.1 thiol:disulfide interchange protein DsbA/DsbL -
  V1M48_RS26370 (V1M48_26370) - 3529602..3530480 (-) 879 WP_009699086.1 acyltransferase -
  V1M48_RS26375 (V1M48_26375) - 3530645..3531601 (+) 957 WP_330472356.1 DUF2860 domain-containing protein -
  V1M48_RS26380 (V1M48_26380) - 3531751..3532584 (+) 834 WP_038897975.1 GGDEF domain-containing protein -
  V1M48_RS26385 (V1M48_26385) comM 3532587..3534110 (-) 1524 WP_005451005.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1M48_RS26390 (V1M48_26390) ilvG 3534573..3536219 (+) 1647 WP_009699088.1 acetolactate synthase 2 catalytic subunit -
  V1M48_RS26395 (V1M48_26395) ilvM 3536231..3536515 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  V1M48_RS26400 (V1M48_26400) ilvE 3536528..3537466 (+) 939 WP_005451015.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54966.94 Da        Isoelectric Point: 9.2602

>NTDB_id=929704 V1M48_RS26385 WP_005451005.1 3532587..3534110(-) (comM) [Vibrio harveyi strain WHSS0915]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKETKTHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAAVKERVNQARNDMLNRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=929704 V1M48_RS26385 WP_005451005.1 3532587..3534110(-) (comM) [Vibrio harveyi strain WHSS0915]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTCGGTAAGCGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGGTTTACGCTGGTGGGTCTACCGGAAACCACAGTAAAAGAATCGAAAGATCGTGTCCGAAGTGCGATCG
TTAATTCCAACTTTCAGTTTCCAGCAAAACGAATTACGGTCAATTTGGCTCCTGCTGACTTGCCCAAAGAAGGTGGGCGC
TTTGATCTGCCGATTGCATTAGGGATTTTGGCTGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGAGGGCTGAGACCTGTAAAAGGCGTGCTACCTGCTGCGTTGGCGGCGAACAAAAAACAGC
GTCGTTTAGTGGTGCCTCATGCGAATGGTGATCAAGCGGCATTAGTGGGTAAAGAGCAGCATAAATCAGCCCAATCGTTA
CTGGAAGTGTGTGCTGAGCTTTGTGGTCAGCATCAATTGAATTTATATCAAACCCCGAAGAAAAAAGAGACCAAAACGCA
CGGTCGTGATTTACAAGACATCATTGGTCAACAACAAGGTAAACGCGCTTTAGAAATTGCTGCGGCTGGCAATCACAACC
TACTTTTTCTTGGCCCTCCTGGTACAGGTAAAACCATGTTGGCATCACGGCTATGTGATTTATTGCCAGAGATGAGCGAT
GAAGAAGCCATGGAAACCGCTTCTGTGGCGTCGCTGACTCAAAGTGAAATCAATGAACACAATTGGAAGACGCGACCGTT
CCGCGCTCCGCACCATTCCAGCTCAATGGCTGCTTTAGTCGGAGGTGGCTCAGTACCAAGACCGGGCGAGATATCTCTAG
CCCATAATGGGTTGTTGTTTTTAGATGAGATGCCGGAGTTTGACCGTAAGGTGCTCGATTCTTTGCGAGAGCCTTTGGAG
TCAGGAGAAATTATTATCTCTAGAGCACAAGGTAAAACGCGCTTTCCTGCTCGATTCCAATTGGTTGGTGCATTAAACCC
CAGTCCGACAGGATATTATGAAGGAAATCAAGCACGGACGAATCCACAAGCTATTTTGCGCTACCTTGGACGTTTATCAG
GTCCGCTTCTAGATCGTTTTGATATGTCGCTGGAAATTCCTGCTCTGCCGAAAGGCACATTATCTGAAGGGGGCGATCGA
GGGGAACCAACAGCGGCGGTCAAGGAACGAGTAAATCAAGCACGCAATGATATGCTCAATCGCAGCGGTAAGGTTAATGC
ACTGTTGGGCAGTCGAGAGATTGAAGCGTTTTGCCCGCTACAAAAAAGCGATGCCGAGTTTCTAGAGAACGCTTTGCACC
GCTTGGGATTGTCGATTCGCGCGTATCACCGCATCATCAAAGTTGCGCGTACTATCGCTGATCTGGAAGGTTCACCACAA
ATTGAACGAACTCACCTTGCAGAAGCATTGGGGTATCGAGCGATGGATAGATTACTCAAACAGTTGACGGCGCAGGCAGT
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

98.225

100

0.982
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.444