Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V1499_RS22845 Genome accession   NZ_CP143543
Coordinates   4559538..4560050 (-) Length   170 a.a.
NCBI ID   WP_409272856.1    Uniprot ID   -
Organism   Neobacillus sp. SCS-31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4554538..4565050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1499_RS22825 (V1499_22825) dnaB 4555014..4556378 (-) 1365 WP_316572291.1 replicative DNA helicase -
  V1499_RS22830 (V1499_22830) rplI 4556509..4556958 (-) 450 WP_409272853.1 50S ribosomal protein L9 -
  V1499_RS22835 (V1499_22835) - 4556955..4558928 (-) 1974 WP_409272854.1 DHH family phosphoesterase -
  V1499_RS22840 (V1499_22840) rpsR 4559248..4559487 (-) 240 WP_053368607.1 30S ribosomal protein S18 -
  V1499_RS22845 (V1499_22845) ssbA 4559538..4560050 (-) 513 WP_409272856.1 single-stranded DNA-binding protein Machinery gene
  V1499_RS22850 (V1499_22850) rpsF 4560122..4560409 (-) 288 WP_066205283.1 30S ribosomal protein S6 -
  V1499_RS22855 (V1499_22855) ychF 4560589..4561689 (-) 1101 WP_316572295.1 redox-regulated ATPase YchF -
  V1499_RS22860 (V1499_22860) - 4561847..4563859 (-) 2013 WP_409272858.1 molybdopterin-dependent oxidoreductase -
  V1499_RS22865 (V1499_22865) - 4563938..4564135 (-) 198 WP_409272859.1 DUF951 domain-containing protein -
  V1499_RS22870 (V1499_22870) - 4564135..4565028 (-) 894 WP_409272861.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19052.96 Da        Isoelectric Point: 4.9994

>NTDB_id=929485 V1499_RS22845 WP_409272856.1 4559538..4560050(-) (ssbA) [Neobacillus sp. SCS-31]
MMNRVVLVGRLTKDPELRYTPSGVPMATFTLAVNRTFSNQQGEREADFINCVVWRKPAENVANYLKKGSLAGIDGRIQTR
NYEGQDGKRVYVTEVVAESVQFLEPRNSGNRNDNNNDYYGSAPREQGNPFGNNNQNQRPAPAKQQGYTRMDDDPFAGSGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=929485 V1499_RS22845 WP_409272856.1 4559538..4560050(-) (ssbA) [Neobacillus sp. SCS-31]
ATGATGAATCGTGTCGTACTGGTTGGCCGTTTAACGAAAGATCCTGAACTTCGATATACGCCAAGCGGTGTTCCGATGGC
TACATTTACTCTTGCGGTTAACCGTACATTCTCTAACCAGCAGGGTGAGAGAGAGGCAGACTTCATTAACTGTGTGGTAT
GGAGAAAACCAGCGGAAAACGTCGCCAATTACCTTAAAAAAGGGAGTTTGGCGGGCATTGATGGCCGTATTCAAACCCGC
AATTATGAAGGGCAGGACGGAAAGCGTGTCTATGTAACAGAAGTCGTAGCGGAAAGCGTTCAATTCCTTGAACCAAGGAA
TTCCGGCAATAGAAACGACAACAACAACGATTACTATGGCAGTGCTCCAAGGGAACAGGGTAATCCTTTTGGGAACAACA
ATCAGAATCAACGGCCCGCACCCGCAAAGCAGCAGGGCTATACTCGGATGGATGATGATCCGTTCGCTGGCAGCGGACAG
ATTGATATATCCGACGATGACCTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.537

100

0.682
  ssb Latilactobacillus sakei subsp. sakei 23K

53.763

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.353

0.382
  ssb Neisseria meningitidis MC58

34.973

100

0.376
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.727

77.647

0.371