Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   V0I11_RS06070 Genome accession   NZ_CP143490
Coordinates   1293269..1293703 (-) Length   144 a.a.
NCBI ID   WP_061406215.1    Uniprot ID   Q9LA12
Organism   Pasteurella multocida strain FCf147     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1288269..1298703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0I11_RS06040 (V0I11_06040) - 1288833..1289102 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  V0I11_RS06045 (V0I11_06045) yacG 1289102..1289305 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  V0I11_RS06050 (V0I11_06050) coaE 1289316..1289936 (-) 621 WP_005722564.1 dephospho-CoA kinase -
  V0I11_RS06055 (V0I11_06055) - 1289951..1290673 (-) 723 WP_170385408.1 prepilin peptidase -
  V0I11_RS06060 (V0I11_06060) - 1290673..1291884 (-) 1212 WP_250192716.1 type II secretion system F family protein -
  V0I11_RS06065 (V0I11_06065) pilB 1291884..1293269 (-) 1386 WP_330453240.1 GspE/PulE family protein Machinery gene
  V0I11_RS06070 (V0I11_06070) pilA 1293269..1293703 (-) 435 WP_061406215.1 prepilin peptidase-dependent pilin Machinery gene
  V0I11_RS06075 (V0I11_06075) ampD 1293863..1294429 (+) 567 WP_330453242.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  V0I11_RS06080 (V0I11_06080) rppH 1295015..1295482 (+) 468 Protein_1164 RNA pyrophosphohydrolase -
  V0I11_RS06085 (V0I11_06085) - 1295614..1296408 (+) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -
  V0I11_RS06090 (V0I11_06090) lgt 1296418..1297221 (+) 804 WP_005751073.1 prolipoprotein diacylglyceryl transferase -
  V0I11_RS06095 (V0I11_06095) - 1297227..1298078 (+) 852 WP_005751072.1 thymidylate synthase -
  V0I11_RS06100 (V0I11_06100) tadA 1298093..1298593 (+) 501 WP_005722410.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15213.68 Da        Isoelectric Point: 9.1215

>NTDB_id=929175 V0I11_RS06070 WP_061406215.1 1293269..1293703(-) (pilA) [Pasteurella multocida strain FCf147]
MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNTPSECSAGQHGIR
ANISSGKKYLSSINVKSGVITVIGQKSLEGVNYTLSATGNAVDGVSWSVKCNGGSEVFPAGFCA

Nucleotide


Download         Length: 435 bp        

>NTDB_id=929175 V0I11_RS06070 WP_061406215.1 1293269..1293703(-) (pilA) [Pasteurella multocida strain FCf147]
ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT
TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCTGCTC
CTTATCGTGCCGAGGTAGAACTTTGTATCTATAATACAAATACGCCCAGTGAATGTAGTGCAGGACAGCATGGTATTAGA
GCAAATATAAGTTCTGGTAAAAAATATCTCAGCTCAATCAATGTCAAGTCTGGCGTGATTACTGTCATTGGTCAAAAAAG
CTTAGAGGGAGTCAATTACACTTTAAGCGCGACAGGAAATGCCGTTGATGGTGTTTCATGGAGTGTAAAATGTAATGGTG
GTAGTGAAGTTTTCCCAGCAGGATTTTGCGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9LA12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

59.028

100

0.59
  pilA Haemophilus influenzae Rd KW20

59.028

100

0.59
  pilA Glaesserella parasuis strain SC1401

53.02

100

0.549
  comP Acinetobacter baylyi ADP1

37.681

95.833

0.361