Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VR487_RS01800 Genome accession   NZ_CP143431
Coordinates   385230..386756 (-) Length   508 a.a.
NCBI ID   WP_330147923.1    Uniprot ID   -
Organism   Shewanella oncorhynchi strain B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 380230..391756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR487_RS01775 (VR487_01775) prpB 380763..381641 (-) 879 WP_330147921.1 methylisocitrate lyase -
  VR487_RS01780 (VR487_01780) - 381694..382461 (-) 768 WP_006084449.1 GntR family transcriptional regulator -
  VR487_RS01785 (VR487_01785) - 382761..383255 (+) 495 WP_131524937.1 DUF523 domain-containing protein -
  VR487_RS01790 (VR487_01790) - 383263..384207 (-) 945 WP_330147922.1 acyltransferase -
  VR487_RS01795 (VR487_01795) - 384221..385117 (-) 897 WP_105250476.1 acyltransferase -
  VR487_RS01800 (VR487_01800) comM 385230..386756 (-) 1527 WP_330147923.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VR487_RS01805 (VR487_01805) - 386975..388120 (+) 1146 WP_330147924.1 DUF1963 domain-containing protein -
  VR487_RS01810 (VR487_01810) - 388811..389839 (+) 1029 WP_131524932.1 ABC transporter substrate-binding protein -
  VR487_RS01815 (VR487_01815) - 389885..391669 (+) 1785 WP_330148631.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55359.69 Da        Isoelectric Point: 8.1130

>NTDB_id=929027 VR487_RS01800 WP_330147923.1 385230..386756(-) (comM) [Shewanella oncorhynchi strain B]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPINSLKNIEFAGELALSGHIRYCQGLLPAIIAAKRQDHTLVLPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWVSQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDLDSHHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKLARELQLARAGVLNSELTGKQLKRFSGLSDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHLAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=929027 VR487_RS01800 WP_330147923.1 385230..386756(-) (comM) [Shewanella oncorhynchi strain B]
ATGGCGATAGCCTGTGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCTCCACAAGTCACAGTTGAAGTACATCTCAGCAA
CGGCTTACCAGCATTTAATCTTGTAGGCTTACCCGAAGCTTCGGTAAAAGAAGCCCGTGAGCGAGTACGCAGTGCCTTGA
TCAATGCGGGATTCGAGTTTCCAATGCGGCGGATAACAGTCAATCTCGCGCCAGCTGATTTACCTAAACAAGGTGGCCGC
TACGACTTACCCATCGCCGTGGGCATATTGGCCGCTTCGGAACAGATTCCCATTAACAGTTTAAAAAATATCGAGTTTGC
CGGCGAGCTGGCACTGTCAGGGCACATACGTTACTGCCAAGGGTTATTGCCCGCGATTATCGCTGCAAAGCGCCAAGACC
ATACCTTGGTCTTACCGCTAGATAACCGCCACGATGCCGAGCTAGTCGGCTATCCCAATGTGTTGTTTGGCTCGCATCTA
CAAAGTCTAGCCGCGTATTTACAAGGGCAAAACCAACTACCCACACTGGCGCCACAGTTAGAATGGGTAAGCCAAGAGAC
ACCCGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCTGCGGGTA
ACCACAACCTCTTGATGCTAGGCCCGCCGGGTACTGGCAAGACCATGCTTGCCAGCCGCATGATGGCGCTATTGCCCGCA
CTCAATTATGAGGAAGCGTTAGAAGTGGCGGCAATTCATTCCGTTGCTGGACTCGACATAAAACCGCAGCATTTTTTACA
GCGACCATTTAGGGCGCCGCACCACACGAGTTCTTCGATCTCCCTCGTGGGCGGTGGCAGTATCCCAAAACCAGGGGAGA
TCTCCCTCGCCCATCGCGGTGTATTATTCTTGGATGAAGTGGCTGAATTTCCTCGTAAAGTCTTAGATTGCCTGCGTGAA
CCGATGGAAACCGGCGAAGTAGTGATTTCCCGCGCCGCCGCTAAGCTGACATTTTTAAGTCGATTCCAATTAATCGCAGC
GATGAATCCTAGCCCTAGTGGCGACTTGGATAGCCATCATAGATCCAGCCCAGAACAAATCCAACGTTATCTTTCGCGGC
TTTCAGGTCCGTTTCTCGATCGTTTCGACTTGACCATAGAAGTGCCCAAACTTCCCGCGGGCACTTTGACTCAAGCCGCG
CCGCAGACAGAAACCAGCCAAGATATCGCCAAACGAGTGAAGCTGGCGCGTGAGCTACAACTCGCCCGTGCTGGTGTGCT
CAATAGCGAACTTACAGGGAAACAATTGAAACGCTTCAGCGGGCTCAGTGATGCTGATTTAGTATTTTTGGAGCAAAGCG
TGGTGAAGCTTGGCCTTTCGGTTCGCAGTTTTCATCGTATACAAAGAGTCGCCCGCACTATCGCCGATCTTGAACAAGCA
CCTAACACCGAACGCCGTCATCTTGCCCAAGCACTGGGTTATCGTGCTATGGATAGGTTGCTGGCACGACTATCCCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.255

100

0.575
  comM Haemophilus influenzae Rd KW20

56.299

100

0.563
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Vibrio campbellii strain DS40M4

55.599

100

0.557
  comM Legionella pneumophila str. Paris

46.365

100

0.465
  comM Legionella pneumophila strain ERS1305867

46.365

100

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.347

97.638

0.423