Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1234_RS22670 Genome accession   NZ_CP143341
Coordinates   4749675..4750205 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain 2023CB-00608     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4744675..4755205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1234_RS22640 (V1234_22640) - 4745736..4746143 (-) 408 WP_038874298.1 VOC family protein -
  V1234_RS22645 (V1234_22645) - 4746191..4746859 (-) 669 WP_197804224.1 glutathione S-transferase family protein -
  V1234_RS22650 (V1234_22650) - 4746856..4747299 (-) 444 WP_047570370.1 lipocalin-like domain-containing protein -
  V1234_RS22655 (V1234_22655) bhsA 4747496..4747756 (+) 261 WP_060440954.1 multiple stress resistance protein BhsA -
  V1234_RS22660 (V1234_22660) - 4747812..4748729 (-) 918 WP_197804223.1 LysR family transcriptional regulator -
  V1234_RS22665 (V1234_22665) - 4748862..4749611 (+) 750 WP_197804222.1 3-oxoacyl-ACP reductase family protein -
  V1234_RS22670 (V1234_22670) ssb 4749675..4750205 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1234_RS22675 (V1234_22675) uvrA 4750483..4753311 (+) 2829 WP_141999051.1 excinuclease ABC subunit UvrA -
  V1234_RS22680 (V1234_22680) - 4753541..4754593 (+) 1053 WP_330113099.1 NAD(P)-dependent alcohol dehydrogenase -
  V1234_RS22685 (V1234_22685) maa 4754624..4755181 (-) 558 WP_330113100.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=928690 V1234_RS22670 WP_004936793.1 4749675..4750205(-) (ssb) [Serratia marcescens strain 2023CB-00608]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=928690 V1234_RS22670 WP_004936793.1 4749675..4750205(-) (ssb) [Serratia marcescens strain 2023CB-00608]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364