Detailed information NTG0928653

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: SA496_RS25175
• Genome accession: NZ_CP143312
• Coordinates: 5363056..5364552 (+)
• Length: 498 a.a.
• NCBI ID: WP_153919077.1
• Uniprot ID: -
• Organism: Pseudomonas sp. JS3066
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5358056..5369552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SA496_RS25145 (SA496_25145)	-	5358808..5359512 (+)	705	WP_120653968.1	HAD-IA family hydrolase	-
SA496_RS25150 (SA496_25150)	sutA	5359692..5360006 (-)	315	WP_120653967.1	transcriptional regulator SutA	-
SA496_RS25155 (SA496_25155)	-	5360083..5360508 (-)	426	WP_120653966.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
SA496_RS25160 (SA496_25160)	-	5360647..5361966 (-)	1320	WP_120653965.1	ammonium transporter	-
SA496_RS25165 (SA496_25165)	glnK	5362001..5362339 (-)	339	WP_003457590.1	P-II family nitrogen regulator	-
SA496_RS25170 (SA496_25170)	-	5362754..5363017 (+)	264	WP_120653964.1	accessory factor UbiK family protein	-
SA496_RS25175 (SA496_25175)	comM	5363056..5364552 (+)	1497	WP_153919077.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
SA496_RS25180 (SA496_25180)	betT	5364665..5366641 (+)	1977	WP_153919080.1	choline BCCT transporter BetT	-
SA496_RS25185 (SA496_25185)	-	5367161..5367757 (+)	597	WP_120653961.1	fimbrial protein	-
SA496_RS25190 (SA496_25190)	-	5367816..5368535 (+)	720	WP_120653960.1	molecular chaperone	-

Sequence

Protein

• Length: 498 a.a.
• Molecular weight: 52969.85 Da
• Isoelectric Point: 7.2359

>NTDB_id=928653 SA496_RS25175 WP_153919077.1 5363056..5364552(+) (comM) [Pseudomonas sp. JS3066]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAIQNSGFDFPPRRITLNLAPADLPKDGGR
FDLAIALGVLAASGQLPAGALDEVECLGELALSGSLRSVQGVLPAALAARAAGRTLVVPRDNAEEASLAGGLKVLAASHL
LELTAHFAGHTPLPFYQAQGLMDERPPYPDLAEVQGQVAAKRALLVAAAGSHNLLLCGPPGTGKTLLASRLPGLLPPLEE
HEALEVAAIHSVASHAPLTSWPQRPFRQPHHSASGAALVGGGSRPKPGEITLAHQGVLFLDELPEFERKVLEVLREPMES
GEIVIARAHDKLRFPARFQLVAAMNPCPCGYLGDPAGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVAREATALEPPTST
GPGSAEVAATVAQSRRVQLRRQGCANAFLDLKGLRQHCALESEDRAWLEAACERLNLSLRAAHRILKVARTLADLEQAET
IARHHLGEALQYRPETMT

Nucleotide

• Length: 1497 bp

>NTDB_id=928653 SA496_RS25175 WP_153919077.1 5363056..5364552(+) (comM) [Pseudomonas sp. JS3066]
ATGTCCCTGGCCATCGTCCACAGTCGCGCGCAGGTTGGCGTCGAAGCCCCTGCCGTGACCGTCGAAGCGCACCTCGCCAA
CGGCCTGCCGTCCCTGGCCCTGGTTGGCCTTCCGGAAACCGCCGTGAAGGAAAGCAAGGACCGCGTCCGCAGCGCGATCC
AGAACAGCGGGTTCGATTTCCCTCCCCGACGCATCACCCTCAACCTCGCTCCGGCAGATCTGCCGAAAGATGGCGGCCGC
TTCGACCTCGCCATTGCCCTTGGCGTGCTCGCGGCCAGCGGCCAATTGCCGGCCGGTGCCCTGGATGAGGTGGAATGCCT
GGGTGAACTGGCGCTTTCCGGCTCGCTGCGATCTGTGCAGGGTGTACTCCCCGCCGCGCTCGCCGCTCGCGCCGCCGGGC
GGACCCTGGTGGTGCCACGGGATAATGCCGAAGAAGCCAGCCTGGCCGGCGGTCTCAAGGTGCTGGCCGCCTCGCACTTG
CTGGAGCTGACCGCGCACTTTGCCGGCCATACCCCACTGCCCTTCTACCAGGCCCAGGGCCTGATGGACGAGCGCCCGCC
CTACCCCGACCTCGCCGAAGTCCAGGGCCAGGTCGCAGCAAAGCGCGCCCTCCTGGTCGCTGCGGCTGGGTCGCACAACC
TGTTGCTTTGCGGGCCGCCCGGCACCGGCAAGACCTTGCTGGCCAGTCGCCTGCCTGGTCTGCTGCCACCGCTGGAAGAG
CATGAGGCCCTGGAAGTGGCGGCCATCCACTCGGTTGCCAGCCATGCACCGCTGACGAGCTGGCCGCAACGCCCCTTCCG
CCAGCCCCATCACAGCGCCTCCGGTGCCGCGCTGGTAGGTGGTGGTAGTCGGCCGAAGCCGGGCGAAATCACCCTGGCGC
ATCAGGGCGTGCTGTTCCTCGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTGGAGGTCCTGCGAGAGCCCATGGAAAGC
GGTGAGATCGTCATCGCCCGCGCCCATGACAAGCTGCGTTTTCCAGCGCGCTTCCAACTGGTCGCGGCAATGAACCCCTG
CCCCTGTGGATATCTCGGCGACCCGGCCGGGCGATGCCGCTGTACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGTTGT
CCGGCCCGCTACTTGACCGGATCGACCTGCACCTGACAGTTGCCCGCGAAGCAACCGCCCTGGAGCCACCGACAAGCACG
GGGCCCGGCAGCGCGGAAGTTGCCGCGACGGTGGCGCAATCACGCCGCGTGCAACTCCGACGCCAGGGGTGCGCCAACGC
CTTCCTCGACCTCAAGGGCCTGCGCCAGCATTGCGCCCTGGAAAGCGAAGACCGCGCCTGGCTGGAAGCAGCCTGCGAAC
GCCTCAATCTCTCCCTGCGTGCAGCCCATCGCATCCTCAAGGTGGCTCGCACCCTAGCCGATCTGGAGCAGGCCGAAACC
ATAGCCCGCCATCACCTCGGCGAAGCCCTGCAGTACCGCCCGGAAACCATGACATGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (403-493)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	55.758	99.398	0.554
comM	Vibrio cholerae strain A1552	55.354	99.398	0.55
comM	Haemophilus influenzae Rd KW20	53.984	100	0.544
comM	Glaesserella parasuis strain SC1401	53.908	100	0.54
comM	Legionella pneumophila str. Paris	50.297	100	0.51
comM	Legionella pneumophila strain ERS1305867	50.297	100	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.168	100	0.46