Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VSX76_RS12495 Genome accession   NZ_CP143311
Coordinates   2263298..2264803 (-) Length   501 a.a.
NCBI ID   WP_330110148.1    Uniprot ID   -
Organism   Methylophaga thalassica strain IOM01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258298..2269803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSX76_RS12465 (VSX76_12460) - 2259042..2259530 (+) 489 WP_330110144.1 Na+/H+ antiporter subunit E -
  VSX76_RS12470 (VSX76_12465) - 2259530..2259799 (+) 270 WP_007146389.1 K+/H+ antiporter subunit F -
  VSX76_RS12475 (VSX76_12470) - 2259803..2260129 (+) 327 WP_007146390.1 Na+/H+ antiporter subunit G -
  VSX76_RS12480 (VSX76_12475) - 2260129..2260575 (+) 447 WP_330110145.1 YaiI/YqxD family protein -
  VSX76_RS12485 (VSX76_12480) - 2260650..2261174 (+) 525 WP_330110146.1 cytochrome b -
  VSX76_RS12490 (VSX76_12485) rep 2261207..2263228 (-) 2022 WP_330110147.1 DNA helicase Rep -
  VSX76_RS12495 (VSX76_12490) comM 2263298..2264803 (-) 1506 WP_330110148.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VSX76_RS12500 (VSX76_12495) - 2264978..2266141 (+) 1164 WP_273181241.1 YdiY family protein -
  VSX76_RS12505 (VSX76_12500) - 2266205..2266519 (-) 315 WP_007146396.1 pyrimidine/purine nucleoside phosphorylase -
  VSX76_RS12510 (VSX76_12505) ubiK 2266531..2266776 (-) 246 WP_007146397.1 ubiquinone biosynthesis accessory factor UbiK -
  VSX76_RS12515 (VSX76_12510) - 2266836..2268281 (-) 1446 WP_330110149.1 helicase HerA-like C-terminal domain-containing protein -
  VSX76_RS12520 (VSX76_12515) - 2268424..2268837 (+) 414 WP_330110150.1 ZapG family protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54517.40 Da        Isoelectric Point: 7.3142

>NTDB_id=928621 VSX76_RS12495 WP_330110148.1 2263298..2264803(-) (comM) [Methylophaga thalassica strain IOM01]
MSIAKVYSRAVTGIHAQSVTIEVHLSNGLPSLSIVGMPETAVKESKDRVRSAILNSQFNFPQQRITINLAPADLPKEGGR
FDLPIALGILAASGQIPLKAIADKEFIGELGLAGECRSVRGVLPTALATSAAKRVLILPSANASEAALIEQCQCFGADSL
LGVCAHLHGQQLLNLAEIPDDISTEPEYPDLIDIRGQSHARRALEIAAAGSHSLLFCGPPGTGKTMLASRLPGILTSMSE
AEAMETAAIHSIASNGFDPAQWRQRPFRSPHHTASAVALVGGGSQPRPGEISLAHNGVLFLDELPEFDRRVLEVLREPIE
SGKISVSRAAQQAEFPARFQLVAAMNPCPCGYLGESRCRCTEEQVRRYRAKVSGPLLDRIDMLVEVPAVDKRLLRNQAAD
ATAEHSEQVRHRVEKARHRQLDRQGKANNLLEQKEIEEVCLLTEQDYQLVEKAIIRLGLSARAYHRILKVARTIADLAGS
RQIQTEHLSEAISYRRLDVGY

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=928621 VSX76_RS12495 WP_330110148.1 2263298..2264803(-) (comM) [Methylophaga thalassica strain IOM01]
ATGAGTATCGCTAAGGTCTATAGCCGTGCGGTGACAGGTATACATGCCCAGTCAGTCACCATAGAAGTGCATTTATCGAA
TGGTTTGCCCAGTTTGTCGATTGTGGGGATGCCTGAAACCGCAGTCAAAGAAAGTAAGGACAGGGTGCGTTCTGCTATTT
TGAACTCACAGTTTAATTTTCCTCAGCAACGCATCACCATTAATTTAGCACCCGCTGATTTACCTAAAGAAGGCGGGCGA
TTTGATTTGCCTATTGCGTTAGGAATACTGGCTGCATCGGGGCAGATTCCCTTAAAAGCGATTGCCGACAAAGAGTTTAT
TGGTGAATTAGGTCTGGCCGGAGAGTGTCGTTCTGTACGTGGTGTTTTGCCAACAGCGCTGGCTACTTCTGCAGCTAAAC
GTGTTTTGATTTTACCCTCAGCCAATGCCAGTGAAGCGGCGCTAATTGAGCAATGTCAGTGTTTTGGTGCAGATAGCTTG
CTGGGCGTATGTGCTCATTTGCATGGACAACAATTACTGAATCTGGCTGAAATACCGGATGATATATCAACTGAACCTGA
GTATCCGGACTTGATTGATATTCGTGGGCAGTCACATGCGCGTCGTGCTTTAGAAATTGCAGCTGCCGGCTCACACAGTC
TTCTTTTTTGTGGACCACCAGGAACCGGCAAAACGATGTTGGCGAGCCGACTGCCCGGTATATTAACCTCCATGTCAGAA
GCTGAAGCTATGGAAACAGCCGCAATACATTCTATCGCCTCGAATGGTTTTGATCCGGCTCAATGGCGTCAGCGGCCATT
TCGGTCACCGCACCACACTGCATCAGCCGTGGCATTGGTGGGCGGTGGCAGTCAACCCAGACCGGGAGAAATATCGTTAG
CGCATAATGGCGTACTTTTTTTAGATGAACTGCCCGAGTTTGACCGCCGCGTATTGGAAGTACTGCGCGAACCGATAGAA
TCTGGCAAAATCTCGGTTTCAAGAGCGGCGCAGCAGGCGGAGTTTCCAGCACGTTTCCAACTTGTCGCAGCGATGAACCC
ATGCCCTTGCGGTTATCTTGGCGAGTCGCGTTGTCGATGTACAGAAGAGCAAGTTCGTCGCTATCGTGCTAAAGTCTCCG
GCCCGTTACTGGACCGAATCGACATGCTGGTCGAGGTACCTGCAGTGGATAAACGTTTATTACGAAATCAAGCGGCTGAT
GCTACTGCAGAGCATTCTGAGCAGGTTCGCCATCGAGTAGAAAAGGCGCGCCACAGACAGCTCGACAGGCAGGGTAAAGC
GAATAATTTGCTGGAACAAAAAGAGATAGAGGAAGTTTGTCTGTTGACTGAACAAGATTATCAACTGGTAGAAAAAGCGA
TTATTCGTCTGGGCTTATCAGCCCGTGCCTATCATCGCATTTTAAAAGTCGCCAGAACGATTGCTGACCTTGCTGGAAGT
CGTCAAATACAAACTGAACATCTTAGCGAAGCCATCAGCTATCGCCGGCTTGATGTAGGTTATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.229

99.401

0.569
  comM Vibrio cholerae strain A1552

57.229

99.401

0.569
  comM Glaesserella parasuis strain SC1401

55.888

100

0.559
  comM Haemophilus influenzae Rd KW20

55.489

100

0.555
  comM Legionella pneumophila str. Paris

53.507

99.601

0.533
  comM Legionella pneumophila strain ERS1305867

53.507

99.601

0.533
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.793

100

0.467