Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB9K98_RS16255 Genome accession   NZ_CP166764
Coordinates   3354536..3355072 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain CRE444     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3349536..3360072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9K98_RS16235 (AB9K98_16235) aphA 3349825..3350538 (+) 714 WP_001315956.1 acid phosphatase AphA -
  AB9K98_RS16240 (AB9K98_16240) yjbQ 3350649..3351065 (+) 417 WP_106474786.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB9K98_RS16245 (AB9K98_16245) yjbR 3351069..3351425 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  AB9K98_RS16250 (AB9K98_16250) uvrA 3351460..3354282 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  AB9K98_RS16255 (AB9K98_16255) ssb 3354536..3355072 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB9K98_RS16260 (AB9K98_16260) yjcB 3355171..3355452 (-) 282 WP_001295689.1 YjcB family protein -
  AB9K98_RS16265 (AB9K98_16265) pdeC 3355882..3357468 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  AB9K98_RS16270 (AB9K98_16270) soxS 3357471..3357794 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  AB9K98_RS16275 (AB9K98_16275) soxR 3357880..3358344 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=928520 AB9K98_RS16255 WP_000168305.1 3354536..3355072(+) (ssb) [Escherichia coli strain CRE444]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=928520 AB9K98_RS16255 WP_000168305.1 3354536..3355072(+) (ssb) [Escherichia coli strain CRE444]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489