Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VZW71_RS01365 Genome accession   NZ_CP143095
Coordinates   285185..286705 (+) Length   506 a.a.
NCBI ID   WP_123828600.1    Uniprot ID   A0AAD1DHB3
Organism   Klebsiella pasteurii strain KO200862     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 280185..291705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZW71_RS01345 (VZW71_01345) - 281750..282679 (-) 930 WP_004097473.1 branched-chain amino acid transaminase -
  VZW71_RS01350 (VZW71_01350) ilvM 282696..282953 (-) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  VZW71_RS01355 (VZW71_01355) ilvG 282950..284596 (-) 1647 WP_087828786.1 acetolactate synthase 2 catalytic subunit -
  VZW71_RS01360 (VZW71_01360) ilvL 284736..284834 (-) 99 WP_001311244.1 ilv operon leader peptide -
  VZW71_RS01365 (VZW71_01365) comM 285185..286705 (+) 1521 WP_123828600.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VZW71_RS01370 (VZW71_01370) - 286729..287067 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  VZW71_RS01375 (VZW71_01375) hdfR 287186..288007 (+) 822 WP_004127343.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55175.53 Da        Isoelectric Point: 7.5908

>NTDB_id=928248 VZW71_RS01365 WP_123828600.1 285185..286705(+) (comM) [Klebsiella pasteurii strain KO200862]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLKAPRINQYEFVGELALTGTLRGVPGAISSAMEAIKAGRKIVISNENSPEVGLIGGSDCLIATDL
QEVCAFLEGQHTLANPLPEGEYSDETSVDLRDVIGQRQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLMPPLSNQ
EALESAAILSLVDSRHAMKNWRRRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTNEE
ESSACVRQRVLAARERQLSRQKKLNAHLGNDEMKICCQLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEAVERI
ERHHLQEALGYRAIDRMLGHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=928248 VZW71_RS01365 WP_123828600.1 285185..286705(+) (comM) [Klebsiella pasteurii strain KO200862]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGCGCCCCGCTTATCACCGTTGAAGTTCATATCAGCAA
CGGGCTCCCAGGCCTGACAATGGTAGGGCTGCCTGAAACAACGGTTAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCTTATCCGGCGAAAAAAATCACTATTAATCTGGCCCCGGCCGATCTGCCAAAAGAAGGTGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCTGAGCAGCTTAAAGCTCCCAGGATAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCACTCTGCGTGGCGTTCCTGGTGCTATATCCAGCGCCATGGAGGCCATAAAAGCGGGGC
GGAAGATTGTTATCTCTAATGAGAATTCTCCAGAGGTTGGGTTAATCGGCGGCAGTGACTGTCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTCGAAGGTCAACATACCCTGGCTAACCCCCTTCCCGAAGGGGAATATTCGGATGAAACATC
GGTTGATTTGCGTGATGTTATTGGCCAGCGGCAGGGGAAACGAGCGCTGGAAATCATTGCAGCAGGTGGTCACAACCTGC
TGATGATAGGCCCGCCCGGCACAGGAAAAACGATGCTCGCCAGTCGATTACCGGGACTAATGCCGCCGCTGAGTAACCAG
GAAGCGCTAGAAAGCGCAGCAATACTTAGCCTGGTCGATTCCAGGCATGCCATGAAAAATTGGCGCCGCAGGCCCTTTCG
CGCCCCGCATCATAGCGCCTCCCTGGCGGCCATGGTCGGCGGAGGCTCAATTCCGGCACCGGGAGAGATTTCCCTTGCCC
ATAACGGCGTCCTGTTCCTGGATGAGTTGCCTGAATTCGAACGCAGGGTTCTGGATGCGTTACGCGAACCCATTGAGTCA
GGGGTTATCCATATCTCGCGCACCCGCGCCAAAATCGATTATCCAGCCCGTTTCCAGCTTATTGCAGCGATGAATCCCAG
CCCGACAGGGCACTATCAGGGCCAGCATAATCGCGCTTCACCGGAACAGACGCTACGCTACCTTGGTCGTTTATCCGGCC
CGTTTCTTGACCGGTTCGATCTCTCCCTGGAGATCCCACTTCCCCCGCCGGGGGTGCTCAGCCAGGGAACAAACGAAGAG
GAAAGTAGCGCCTGCGTACGCCAACGTGTTCTGGCCGCACGCGAAAGGCAGCTATCGCGGCAGAAAAAACTTAATGCGCA
TCTGGGAAATGATGAGATGAAAATCTGCTGCCAGCTTCATCAAGATGACGCTATCTGGCTGGAGCAGACGCTAACGCAGC
TTGGACTTTCAATCCGTGCCTGGCAGCGCCTGCTTAAAGTTTCCCGGACTATTGCCGATATTGAAGCCGTCGAACGCATC
GAACGTCATCATCTGCAGGAGGCTCTTGGCTATCGGGCAATAGACAGAATGTTGGGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.1

100

0.597
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio campbellii strain DS40M4

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

47.984

98.024

0.47
  comM Legionella pneumophila strain ERS1305867

47.984

98.024

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.689

100

0.445