Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VXM60_RS19240 Genome accession   NZ_CP143082
Coordinates   4387866..4389392 (+) Length   508 a.a.
NCBI ID   WP_338590347.1    Uniprot ID   -
Organism   Shewanella khirikhana strain JW44     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4382866..4394392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM60_RS19220 (VXM60_19220) - 4383041..4383838 (+) 798 WP_240591608.1 transporter substrate-binding domain-containing protein -
  VXM60_RS19225 (VXM60_19225) - 4383935..4384744 (+) 810 WP_240591607.1 GGDEF domain-containing protein -
  VXM60_RS19230 (VXM60_19230) - 4384766..4386592 (-) 1827 WP_338590343.1 GGDEF domain-containing protein -
  VXM60_RS19235 (VXM60_19235) - 4386640..4387647 (-) 1008 WP_338590345.1 ABC transporter substrate-binding protein -
  VXM60_RS19240 (VXM60_19240) comM 4387866..4389392 (+) 1527 WP_338590347.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VXM60_RS19245 (VXM60_19245) - 4389568..4392840 (+) 3273 WP_338590348.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  VXM60_RS19250 (VXM60_19250) - 4392845..4394359 (+) 1515 WP_338590350.1 solute:sodium symporter family transporter -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54618.06 Da        Isoelectric Point: 8.1221

>NTDB_id=928158 VXM60_RS19240 WP_338590347.1 4387866..4389392(+) (comM) [Shewanella khirikhana strain JW44]
MAIACVATRASLGVEAPAVTVEVHLANGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASGQIPLTSLKNREFVGELALSGEVRFCSGLLPVIVAARRDGRELILPLANRADAELVDYPAIRLCNQL
VHLVAFLHGQQPLPGLEQGAEWLEEAPGAVTCLSDVIGQYQAKQALEIAAAGAHNLLMLGLPGCGKTMLASRIMGLLPPL
DYDEALEVAALHSVAGLNIKPSEFHRRPFRSPHHTCSAISLVGGGSVPKPGEISLAHRGVLFLDELPEFPRKVLDCLREP
METGEVVISRAAAKLTFASRFQLIAAMNPSPCGSAGPGSRSSPEQISRYLARLSGPFLDRFDLSIEVPPLPPGTLTQNAP
AAETTDTIARRVTAARERQLARAGKLNSELTGKELKQAGFTQQDLEFLEQSVNRLGLSVRSFHRLQRVARTIADLENSPN
VERKHLAQALGYRAMDRLLASLSQQLGR

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=928158 VXM60_RS19240 WP_338590347.1 4387866..4389392(+) (comM) [Shewanella khirikhana strain JW44]
ATGGCCATTGCCTGCGTCGCCACCCGTGCGAGCCTGGGGGTGGAAGCCCCAGCCGTTACCGTCGAGGTTCATCTGGCCAA
CGGCCTGCCTGCGTTTAATCTGGTTGGCCTGCCCGAAGCCTCGGTCAAAGAAGCCCGCGAGCGGGTGCGCAGCGCCCTGA
TCAATGCCGGGTTTGAATTCCCGATGCGCCGCATCACGGTCAATCTGGCCCCAGCCGACTTACCCAAACAGGGTGGTCGT
TACGACCTGCCCATCGCCATCGGTATTCTGGCAGCCTCGGGGCAAATCCCGCTCACCAGCCTGAAAAACCGAGAATTTGT
CGGCGAGCTGGCGCTGTCGGGCGAAGTACGCTTCTGCTCCGGGCTGCTGCCTGTGATTGTGGCCGCCCGCCGGGACGGTC
GCGAACTCATACTGCCGCTCGCCAACCGCGCCGATGCCGAATTGGTCGATTATCCCGCCATTCGCCTGTGCAACCAGTTG
GTCCATCTGGTGGCCTTCCTCCACGGTCAGCAGCCCTTGCCGGGGCTGGAGCAAGGCGCCGAGTGGCTCGAAGAAGCACC
CGGCGCCGTGACTTGCCTTAGCGATGTAATTGGCCAGTATCAGGCCAAACAGGCGCTGGAAATAGCCGCTGCGGGCGCTC
ATAACCTCTTGATGCTTGGCTTGCCTGGCTGCGGTAAAACCATGCTTGCCAGTCGGATCATGGGCTTACTGCCGCCGCTC
GATTATGACGAAGCGCTCGAAGTGGCGGCGCTGCATTCAGTCGCCGGGCTCAACATCAAGCCCAGTGAGTTTCATCGCCG
CCCCTTTCGCTCGCCGCACCACACCTGCTCGGCCATCTCCCTGGTTGGCGGTGGCAGCGTGCCCAAGCCAGGGGAGATTT
CCCTCGCCCACCGGGGCGTGTTGTTTCTCGATGAACTGCCCGAATTCCCACGCAAGGTGCTCGACTGCCTGCGCGAGCCA
ATGGAAACCGGCGAAGTGGTGATCTCCCGCGCCGCCGCCAAACTCACCTTTGCCAGCCGTTTTCAGCTGATTGCCGCCAT
GAACCCAAGCCCCTGCGGCAGCGCCGGCCCCGGCAGCCGCTCAAGTCCTGAGCAAATCAGTCGCTATCTGGCACGGCTTT
CAGGCCCCTTCCTGGACCGCTTCGATTTGTCCATCGAAGTGCCGCCACTGCCGCCGGGCACCCTCACCCAAAACGCCCCG
GCCGCCGAAACCACAGACACCATCGCCCGCCGGGTGACTGCCGCCCGCGAACGCCAGTTGGCACGGGCTGGCAAGCTCAA
CAGCGAACTCACGGGAAAAGAGCTGAAACAGGCTGGATTTACTCAGCAGGACCTTGAATTTCTTGAGCAAAGTGTCAACC
GGCTTGGGTTATCTGTGCGCAGCTTTCACCGCCTGCAACGGGTTGCCCGCACCATTGCCGACCTTGAAAACAGCCCCAAT
GTGGAGCGCAAACATCTGGCACAGGCGCTCGGGTATCGCGCCATGGACAGGCTGCTCGCCAGTCTGTCACAACAGCTCGG
GCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.41

99.803

0.563
  comM Vibrio cholerae strain A1552

56.016

99.803

0.559
  comM Glaesserella parasuis strain SC1401

56.126

99.606

0.559
  comM Vibrio campbellii strain DS40M4

55.424

99.803

0.553
  comM Legionella pneumophila str. Paris

48.594

98.031

0.476
  comM Legionella pneumophila strain ERS1305867

48.594

98.031

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.4

98.425

0.427