Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VXM67_RS03125 Genome accession   NZ_CP142890
Coordinates   693722..695209 (-) Length   495 a.a.
NCBI ID   WP_367237494.1    Uniprot ID   -
Organism   Pseudomonas sp. Rh2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 688722..700209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM67_RS03110 (VXM67_03110) - 691914..692906 (+) 993 WP_023378095.1 response regulator -
  VXM67_RS03115 (VXM67_03115) - 692903..693274 (+) 372 WP_023378096.1 response regulator -
  VXM67_RS03120 (VXM67_03120) - 693322..693576 (-) 255 WP_104882307.1 DUF2790 domain-containing protein -
  VXM67_RS03125 (VXM67_03125) comM 693722..695209 (-) 1488 WP_367237494.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VXM67_RS03130 (VXM67_03130) - 695458..695670 (+) 213 WP_023378100.1 PLDc N-terminal domain-containing protein -
  VXM67_RS03135 (VXM67_03135) - 695999..698023 (+) 2025 WP_023378101.1 DUF4034 domain-containing protein -
  VXM67_RS03140 (VXM67_03140) - 698051..698314 (-) 264 WP_023378102.1 accessory factor UbiK family protein -
  VXM67_RS03145 (VXM67_03145) glnK 698783..699121 (+) 339 WP_002555808.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53008.80 Da        Isoelectric Point: 7.9128

>NTDB_id=927477 VXM67_RS03125 WP_367237494.1 693722..695209(-) (comM) [Pseudomonas sp. Rh2]
MSLALVHSRAQVGVQAPAVSVETHLANGLPNLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQNLAPADLPKDGGR
YDLAIALGILAANGQVPVNALNDIECLGELALSGKLRPVQGILPAALAAREAGRALVVPQENAEEASLAGGLVVYAVGHL
LELVAHLNGQVVLPPYAANGLLLQSRPYPDLSEVQGQVAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSISGHTPLKSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVAREATTLDNHPCG
DTSAKVARVVAEARERQQRRQGCANAFLDLDGLRRHCELTAADQAWLESACERLTLSLRAAHRLLKVARTLADLDRTDSI
ARAHLAEALQYRPGT

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=927477 VXM67_RS03125 WP_367237494.1 693722..695209(-) (comM) [Pseudomonas sp. Rh2]
ATGTCCCTAGCCCTCGTCCACAGTCGCGCCCAGGTGGGCGTGCAGGCACCTGCAGTCAGTGTCGAAACGCATCTGGCCAA
CGGCCTGCCCAATCTCACTCTGGTCGGCTTACCCGAAACCACGGTCAAGGAGAGCAAGGATCGAGTACGCAGCGCCATCG
TCAATTCCGGCCTGGACTATCCCGCCAGGCGTATCACCCAGAACCTTGCCCCAGCCGATCTGCCCAAGGATGGCGGCCGT
TATGACCTGGCCATCGCCTTGGGGATACTCGCCGCCAACGGCCAGGTACCGGTGAACGCCTTGAACGACATCGAGTGCCT
GGGTGAGCTGGCGTTGTCCGGCAAATTACGGCCTGTGCAGGGGATACTGCCGGCCGCCCTGGCAGCGCGCGAAGCAGGTC
GGGCCTTGGTGGTCCCGCAGGAAAACGCTGAAGAAGCCAGTCTGGCGGGTGGCCTGGTGGTCTACGCAGTGGGGCACCTT
CTAGAGTTGGTCGCCCACCTCAACGGCCAGGTGGTGTTGCCGCCATATGCCGCCAATGGCCTGCTGCTGCAAAGTCGGCC
CTACCCCGACTTGAGCGAAGTACAAGGCCAGGTCGCGGCCAAACGGGCACTGCTGCTGGCAGCCGCTGGCGCGCACAACC
TGCTGTTCACCGGGCCACCCGGTACCGGCAAGACTTTGCTGGCCAGTCGCTTGCCAGGGCTGCTGCCGCCGCTGGACGAG
CACGAAGCCCTGGAGGTCGCGGCTATCCAGTCGATCAGTGGGCACACGCCCCTGAAAAGCTGGCCGCAGCGTCCGTTCCG
CCACCCCCATCACTCAGCATCCGGGCCTGCGCTGGTAGGCGGCGGTAGCCGGCCGCAACCCGGCGAAATCACGCTGGCGC
ACCATGGTGTGTTGTTTCTCGATGAGTTGCCAGAGTTCGAGCGACGGGTGCTTGAGGTTCTGCGTGAACCCTTGGAGTCC
GGCGAGATCGTCATCGCCCGTGCCAAGGACAAAGTGCGCTTCCCTGCCCGTTTCCAACTGGTAGCGGCGATGAACCCCTG
CCCTTGTGGCTACCTCGGCGATCCCTCAGGCCGCTGCCGCTGCAGCACAGAGCAGATCCAGCGCTACCGCAACAAACTGT
CAGGCCCGTTGCTCGACCGCATCGACCTGCACCTGACTGTGGCGCGCGAAGCCACCACACTCGACAACCACCCCTGTGGC
GACACCAGCGCCAAGGTCGCCCGTGTCGTGGCTGAGGCCCGCGAACGGCAGCAGCGCCGCCAGGGCTGCGCGAATGCCTT
CCTCGACCTCGATGGCTTGCGCCGTCACTGCGAGCTCACTGCAGCTGACCAGGCCTGGCTGGAAAGCGCCTGCGAACGGC
TGACCCTGTCGCTACGGGCTGCGCACCGCCTACTCAAGGTCGCGCGGACGCTGGCTGACCTGGACAGAACCGACTCGATA
GCCAGGGCTCATTTGGCCGAAGCCCTCCAGTATCGCCCTGGCACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

100

0.556
  comM Haemophilus influenzae Rd KW20

54.6

100

0.552
  comM Vibrio campbellii strain DS40M4

54.949

100

0.549
  comM Glaesserella parasuis strain SC1401

54.2

100

0.547
  comM Legionella pneumophila str. Paris

49.798

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.798

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.614

100

0.473