Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   VW923_RS12545 Genome accession   NZ_CP142827
Coordinates   2543574..2544872 (+) Length   432 a.a.
NCBI ID   WP_010716781.1    Uniprot ID   -
Organism   Enterococcus faecalis strain CF4A-3113     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2538574..2549872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VW923_RS12540 (VW923_12540) rlmH 2542694..2543173 (-) 480 WP_002355021.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  VW923_RS12545 (VW923_12545) htrA 2543574..2544872 (+) 1299 WP_010716781.1 S1C family serine protease Regulator
  VW923_RS12550 (VW923_12550) ytpR 2544919..2545539 (-) 621 WP_002361057.1 YtpR family tRNA-binding protein -
  VW923_RS12555 (VW923_12555) - 2545750..2546205 (-) 456 WP_002385249.1 universal stress protein -
  VW923_RS12560 (VW923_12560) - 2546353..2546667 (-) 315 WP_002355015.1 thioredoxin family protein -
  VW923_RS12565 (VW923_12565) pepA 2546679..2547755 (-) 1077 WP_002355013.1 glutamyl aminopeptidase -
  VW923_RS12570 (VW923_12570) - 2548062..2548403 (+) 342 WP_002355012.1 PepSY domain-containing protein -

Sequence


Protein


Download         Length: 432 a.a.        Molecular weight: 44858.98 Da        Isoelectric Point: 4.9968

>NTDB_id=927191 VW923_RS12545 WP_010716781.1 2543574..2544872(+) (htrA) [Enterococcus faecalis strain CF4A-3113]
MQRKDVTPNSDKKSLLQKFGIGLAGGLLGGALILGGAYSGIIPTPNGGNNAATTTSTNHGDTKVSNVSYNVSSDVTKAVK
KVQNSVVSVINMQSASNNSSADDPFGGLFGGNEGTQDSSGNNGNDLEAASEGSGVIYKKDGKTAYVVTNNHVVDKAQGLE
VVLSDGTKVKGELVGTDAYTDLAVIKISSDKVDQVAEFGNSSKITVGEPAIAIGSPLGSDYANSVTQGIISSVNRNITNK
NESGETININAIQTDAAINPGNSGGPLINIEGQVIGINSVKIVQSTSQVSVEGMGFAIPSNDVVNIINQLEKDGKVTRPA
LGITMSDLTGISSQQQEQILKIPASVKTGVVVRGVEAATPAEKAGLEKYDVITKVDGQDVSSTTDLQSALYKKKVGDKME
VTYYRGSKEMKATIDLTIDKSALTQQNNRNNQ

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=927191 VW923_RS12545 WP_010716781.1 2543574..2544872(+) (htrA) [Enterococcus faecalis strain CF4A-3113]
ATGCAACGAAAAGATGTTACACCTAATTCAGATAAAAAAAGTTTATTGCAAAAATTTGGGATTGGTTTAGCTGGCGGCTT
ACTTGGTGGCGCCCTTATTCTAGGAGGCGCTTATTCTGGGATTATTCCCACACCCAACGGCGGAAATAATGCGGCGACGA
CGACGTCCACTAATCACGGCGACACAAAAGTCAGCAATGTGAGTTACAATGTTTCTAGCGATGTCACAAAAGCCGTGAAA
AAAGTTCAAAATTCTGTGGTTTCTGTCATTAATATGCAAAGTGCTAGCAACAATTCTTCGGCAGATGATCCTTTTGGGGG
ATTGTTCGGTGGGAATGAAGGTACTCAAGACTCTTCCGGCAACAATGGTAACGATTTAGAAGCAGCCAGTGAAGGTAGTG
GGGTTATTTATAAGAAAGATGGTAAAACGGCTTATGTCGTGACAAATAACCACGTCGTAGATAAAGCGCAAGGATTGGAA
GTTGTTTTATCTGATGGTACCAAAGTGAAAGGCGAATTAGTCGGAACCGATGCTTACACGGATTTAGCCGTGATTAAAAT
TTCTTCCGACAAAGTTGATCAAGTCGCTGAGTTTGGGAATTCTAGTAAAATCACAGTCGGTGAGCCTGCTATTGCGATTG
GTTCCCCGCTAGGTTCTGATTATGCTAACTCTGTCACACAAGGAATCATCTCTTCTGTGAATAGAAATATTACCAATAAA
AACGAATCCGGTGAAACCATCAATATTAATGCCATTCAAACCGATGCTGCCATCAATCCAGGAAACTCCGGTGGTCCACT
AATCAATATTGAAGGGCAAGTCATTGGAATTAACTCAGTAAAAATTGTGCAATCAACTAGTCAAGTGAGCGTTGAAGGGA
TGGGCTTTGCCATTCCAAGTAATGACGTAGTCAACATTATCAACCAATTAGAAAAAGATGGTAAAGTGACGCGGCCAGCT
CTCGGGATTACGATGTCTGATTTAACAGGTATCTCTTCACAACAACAAGAACAAATTTTAAAAATTCCAGCTTCTGTAAA
AACTGGCGTAGTGGTTCGTGGTGTTGAAGCAGCGACCCCTGCTGAAAAGGCTGGATTGGAAAAATACGATGTTATCACGA
AAGTTGACGGCCAAGACGTAAGCTCTACTACAGATTTACAAAGCGCGCTTTACAAGAAAAAAGTTGGCGACAAAATGGAA
GTGACTTATTATCGTGGTTCTAAAGAAATGAAAGCAACCATCGATTTAACCATTGATAAGTCAGCTTTAACACAACAAAA
TAATCGCAACAATCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

53.171

94.907

0.505

  htrA Streptococcus mutans UA159

58.63

84.491

0.495

  htrA Streptococcus mitis NCTC 12261

55.135

85.648

0.472

  htrA Streptococcus pneumoniae TIGR4

55.807

81.713

0.456

  htrA Streptococcus pneumoniae Rx1

55.807

81.713

0.456

  htrA Streptococcus pneumoniae D39

55.807

81.713

0.456

  htrA Streptococcus pneumoniae R6

55.807

81.713

0.456