NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	VO226_RS00415	Genome accession	NZ_CP142770
Coordinates	90256..91761 (+)	Length	501 a.a.
NCBI ID	WP_013330860.1	Uniprot ID	-
Organism	Halomonas elongata strain SEK2
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 85256..96761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VO226_RS00395 (VO226_00395)	glnK	87407..87745 (-)	339	WP_013330856.1	P-II family nitrogen regulator	-
VO226_RS00400 (VO226_00400)	-	87901..89142 (-)	1242	WP_013330857.1	ammonium transporter	-
VO226_RS00405 (VO226_00405)	-	89188..89526 (-)	339	WP_013330858.1	P-II family nitrogen regulator	-
VO226_RS00410 (VO226_00410)	-	89819..90163 (+)	345	WP_328716903.1	accessory factor UbiK family protein	-
VO226_RS00415 (VO226_00415)	comM	90256..91761 (+)	1506	WP_013330860.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
VO226_RS00420 (VO226_00420)	-	92016..92954 (-)	939	WP_193344414.1	glycerophosphodiester phosphodiesterase	-
VO226_RS00425 (VO226_00425)	-	93081..93701 (+)	621	WP_328716904.1	DUF4202 domain-containing protein	-
VO226_RS00430 (VO226_00430)	-	93812..94090 (+)	279	WP_013330868.1	hypothetical protein	-
VO226_RS00435 (VO226_00435)	-	94163..95419 (-)	1257	WP_013330869.1	dicarboxylate/amino acid:cation symporter	-
VO226_RS00440 (VO226_00440)	-	95566..96327 (-)	762	WP_328716905.1	dienelactone hydrolase family protein	-

Sequence

Protein

Download Length: 501 a.a. Molecular weight: 53806.82 Da Isoelectric Point: 6.9349

                                >NTDB_id=926697 VO226_RS00415 WP_013330860.1 90256..91761(+) (comM) [Halomonas elongata strain SEK2]

MTLAIIRTRAGLGLEAPEVLVEVHLTNGLPGITLVGLPETAVKESRERVRSALVNAGFEFPLRRITLNLAPADLPKDGGR

FDLPIALGLLVASGQIPPEALAEVECVGELALDGGLRPASGVLPLAMATRQAGRRLIVPRANADEAALAGDLEVLPAEHL

LEVVAHLLGQETIAAHRLQAPPRRDTSEPDLREVRGQHQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLGE

DEALEVAAVRSVSGLPLAEQWGRRPFRAPHHTASAVALVGGGSRPKPGEISLAHHGVLFLDELPEFSRQVLEVMREPMES

GQIHIARANHERRYPARFQLVAAMNPCPCGHLGDPRQACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALPAEQLTSRES

GEDSATVRERVLAARERQWSRGALNAYLAGPDLEAACALGADDRAWLAEVLERLQLSARAFHRVLRVALTLADLAGAPRP

TREHLIEAIGYRQLDRLLKGG

Nucleotide

Download Length: 1506 bp

                                >NTDB_id=926697 VO226_RS00415 WP_013330860.1 90256..91761(+) (comM) [Halomonas elongata strain SEK2]

ATGACGCTGGCGATCATTCGCACCCGGGCGGGCCTCGGCCTGGAGGCGCCCGAGGTGCTTGTCGAGGTACACCTGACCAA

CGGCCTGCCCGGCATCACGCTGGTCGGGCTGCCCGAAACCGCCGTCAAGGAAAGCCGGGAGAGGGTGCGCAGCGCCTTGG

TCAATGCCGGTTTCGAATTTCCGCTGCGGCGTATCACCCTGAATCTGGCGCCCGCCGATCTTCCCAAGGATGGCGGGCGC

TTTGATCTCCCCATCGCACTGGGCCTGCTGGTCGCTTCCGGACAGATTCCGCCCGAGGCCCTGGCCGAGGTGGAGTGTGT

GGGCGAACTGGCGTTGGACGGCGGCCTGCGCCCGGCGAGCGGGGTGCTACCGCTGGCCATGGCCACGCGGCAAGCGGGAC

GGCGCTTGATCGTGCCCCGAGCCAACGCCGACGAAGCGGCCCTGGCCGGTGATCTGGAGGTTCTGCCCGCCGAGCATCTG

CTGGAGGTGGTGGCCCATCTTCTCGGGCAGGAAACCATTGCCGCCCATCGGCTGCAGGCGCCGCCACGTCGCGATACCTC

GGAGCCGGATCTGCGCGAGGTGAGAGGGCAACACCAGGCGCGCCGGGCCCTGGAAGTCGCGGCGGCGGGAGGACACAACC

TGTTGTTCGCCGGCCCGCCCGGCACCGGCAAGACCATGCTGGCCAGTCGTCTGCCCGGCATCCTGCCGCCGCTCGGCGAG

GACGAGGCCCTGGAGGTCGCGGCGGTACGTTCGGTCAGTGGATTGCCGCTGGCCGAGCAGTGGGGACGTCGCCCCTTTCG

AGCCCCACATCACACTGCGAGTGCCGTAGCTCTGGTCGGCGGCGGCTCGCGTCCCAAGCCGGGGGAGATCTCCCTGGCGC

ACCACGGCGTACTGTTTCTCGACGAACTGCCGGAGTTCTCGCGGCAGGTTCTGGAAGTGATGCGCGAGCCCATGGAATCC

GGACAGATCCACATTGCCCGCGCCAACCACGAGCGTCGTTATCCGGCGCGTTTCCAACTGGTGGCGGCCATGAATCCCTG

CCCCTGCGGTCATCTTGGCGACCCGCGCCAGGCCTGTCACTGCACGGCCGCCCAGATTCAGCGCTATCAGGCGCGACTGT

CAGGCCCCTTGCTGGATCGCATCGACCTGCAGGTGGAAGTGCCGGCCCTGCCAGCAGAGCAATTGACCTCGCGGGAGTCG

GGAGAGGATTCGGCGACAGTACGCGAACGGGTTTTGGCGGCGCGTGAGCGCCAATGGTCGAGAGGAGCGCTCAACGCCTA

CCTGGCAGGCCCCGATCTGGAAGCCGCTTGCGCGCTGGGTGCCGATGACCGTGCCTGGCTCGCCGAAGTGCTGGAGCGAC

TGCAGCTTTCGGCACGTGCCTTCCATCGCGTGCTCCGGGTGGCCCTGACCCTCGCAGACCTGGCCGGTGCCCCCAGGCCG

ACCCGCGAGCATCTGATCGAGGCCATCGGTTATCGCCAGCTCGACCGCTTGCTCAAGGGTGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio campbellii strain DS40M4	55.556	100	0.559
comM	Vibrio cholerae strain A1552	54.582	100	0.547
comM	Haemophilus influenzae Rd KW20	53.557	100	0.541
comM	Glaesserella parasuis strain SC1401	53.346	100	0.541
comM	Legionella pneumophila str. Paris	51.098	100	0.511
comM	Legionella pneumophila strain ERS1305867	51.098	100	0.511
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	47.686	99.202	0.473

Detailed information NTG0926697