Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VIJ98_RS19155 Genome accession   NZ_CP142688
Coordinates   4112473..4113993 (+) Length   506 a.a.
NCBI ID   WP_323275518.1    Uniprot ID   -
Organism   Pantoea sp. S18     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4107473..4118993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIJ98_RS19135 (VIJ98_19120) - 4109048..4109977 (-) 930 WP_007888821.1 branched-chain amino acid transaminase -
  VIJ98_RS19140 (VIJ98_19125) ilvM 4109996..4110253 (-) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  VIJ98_RS19145 (VIJ98_19130) ilvG 4110250..4111896 (-) 1647 WP_323275516.1 acetolactate synthase 2 catalytic subunit -
  VIJ98_RS19150 (VIJ98_19135) ilvL 4112046..4112144 (-) 99 WP_071531048.1 ilv operon leader peptide -
  VIJ98_RS19155 (VIJ98_19140) comM 4112473..4113993 (+) 1521 WP_323275518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VIJ98_RS19160 (VIJ98_19145) - 4114024..4114362 (-) 339 WP_008106616.1 DUF413 domain-containing protein -
  VIJ98_RS19165 (VIJ98_19150) hdfR 4114484..4115305 (+) 822 WP_008106614.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55136.36 Da        Isoelectric Point: 7.6188

>NTDB_id=926448 VIJ98_RS19155 WP_323275518.1 4112473..4113993(+) (comM) [Pantoea sp. S18]
MSLSKVLTRAALGVQAPLVTVEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPDAKLGQYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNKTTLTIAHYQPETLEQEKQDLSDIIGQDQGRRALEITAAGGHNLLLIGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGNLHHQWRKRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GEIAISRTRAKVTYPARFQLIGAMNPSPTGHYQGNHNRSSPQQVLRYLNRLSGPFLDRFDLSLEVPLLPSGSLSKKQQVS
ESSAEVLTRVLAARQIQTARSGKVNAHLSNPEILRWCPLKQQDAEWLEEVLNSLGLSVRAWQRILKVARTIADLAGEELI
TRSHLQEAVGYRSIDRLMIYLHKTLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=926448 VIJ98_RS19155 WP_323275518.1 4112473..4113993(+) (comM) [Pantoea sp. S18]
ATGTCTTTATCCAAAGTATTAACACGAGCTGCGCTAGGTGTTCAGGCTCCGCTGGTGACGGTAGAAGTACACATCAGCAA
CGGCTTGCCGGCCCTGACGCTGGTTGGACTGCCTGAAACCACCGTAAAAGAAGCGCGGGAACGGGTGCGTAGCGCAATTA
TTAATAGCGGATTCACCTTCCCGGCGAAACGCGTCACCATCAATCTGGCACCTGCTGATCTGCCTAAAGAAGGCGGACGC
TATGATCTTCCCATCGCTATCGCCATTCTGGCAGCCTCTGAGCAGCTGCCAGACGCAAAACTAGGGCAATATGAATTCCT
GGGGGAGTTAGCGCTTAACGGCGCGCTCTGTGGCGTTCAGGCCGCTATTCCGGCGGCGATGGCGGCGCTGCAAGCGGGCA
GACAAATGGTGTTAGCTGAACAGAATCAACAGGATGTCGGGTTGATTCAACAAGGCGAGACGCTGGTTGGAAAACATCTG
GTAGAAATCTGTGCGTTTCTGCATAACAAAACTACCCTCACCATCGCGCACTATCAGCCTGAAACGCTTGAACAGGAAAA
GCAGGACCTCAGCGACATCATTGGTCAGGATCAGGGCCGCCGCGCACTTGAGATCACCGCAGCTGGCGGGCATAACCTGT
TACTGATTGGACCGCCGGGCACCGGCAAGACCATGTTGGCAACGCGTCTGCCCGGTATCATGCCGCCATTGGACGACCAG
GAAGCGCTGGAATGCGCTGCTATCGCCAGTCTGGTAAGCAGCGGCAATCTCCATCATCAGTGGCGCAAACGGCCGTTCAG
AGCGCCTCACCATAGTGCATCACTCTATGCGCTGGTTGGGGGTGGTTCATTGCCACGGCCTGGGGAAATATCTTTGGCAC
ACAACGGTGTGTTATTTCTCGATGAGCTGCCAGAGTTTGAGCGCAGAACGCTGGATGCATTGCGCGAGCCGATCGAATCC
GGGGAAATCGCCATTTCACGCACACGCGCTAAAGTGACTTATCCCGCGCGCTTTCAATTGATCGGTGCAATGAATCCTAG
CCCGACCGGGCATTATCAGGGCAATCATAATCGCTCATCACCTCAGCAAGTGTTGCGCTATCTCAATCGCCTATCAGGAC
CTTTTCTCGATCGCTTTGATTTATCGTTAGAAGTTCCACTTCTTCCGAGCGGATCGCTGAGTAAGAAACAACAAGTCAGT
GAAAGCAGCGCTGAAGTTTTAACTCGCGTCCTTGCCGCGCGACAGATTCAAACAGCACGCAGCGGAAAAGTGAATGCTCA
TCTCTCAAACCCGGAGATTTTACGTTGGTGTCCATTGAAGCAGCAGGATGCTGAATGGCTGGAAGAGGTGTTGAATTCGT
TGGGGCTTTCGGTACGCGCCTGGCAGCGGATTTTAAAGGTGGCGAGGACAATCGCTGATTTGGCAGGTGAAGAGCTGATT
ACGCGGAGTCATTTGCAGGAAGCAGTGGGATATCGCAGCATCGACCGCTTAATGATCTATCTGCACAAAACTCTGGAATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.079

100

0.601
  comM Vibrio cholerae strain A1552

60.359

99.209

0.599
  comM Glaesserella parasuis strain SC1401

60.239

99.407

0.599
  comM Vibrio campbellii strain DS40M4

59.562

99.209

0.591
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.444

100

0.439