Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VOI35_RS09190 Genome accession   NZ_CP142685
Coordinates   1971311..1972822 (-) Length   503 a.a.
NCBI ID   WP_407275749.1    Uniprot ID   -
Organism   Halothiobacillus sp. DCM-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1966311..1977822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI35_RS09170 (VOI35_09155) erpA 1967477..1967830 (-) 354 WP_407275745.1 iron-sulfur cluster insertion protein ErpA -
  VOI35_RS09175 (VOI35_09160) argC 1967851..1968885 (-) 1035 WP_407275746.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  VOI35_RS09180 (VOI35_09165) - 1969018..1970763 (+) 1746 WP_407275747.1 chloride channel protein -
  VOI35_RS09185 (VOI35_09170) - 1970809..1971324 (+) 516 WP_407275748.1 peroxiredoxin family protein -
  VOI35_RS09190 (VOI35_09175) comM 1971311..1972822 (-) 1512 WP_407275749.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VOI35_RS09195 (VOI35_09180) - 1972868..1973143 (-) 276 WP_407275750.1 accessory factor UbiK family protein -
  VOI35_RS09200 (VOI35_09185) - 1973400..1974197 (+) 798 WP_407275751.1 TorF family putative porin -
  VOI35_RS09205 (VOI35_09190) - 1974222..1974560 (+) 339 WP_407275752.1 P-II family nitrogen regulator -
  VOI35_RS09210 (VOI35_09195) - 1974572..1975879 (+) 1308 WP_407275753.1 ammonium transporter -
  VOI35_RS09215 (VOI35_09200) - 1976106..1977554 (+) 1449 WP_407275754.1 DegQ family serine endoprotease -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 52545.59 Da        Isoelectric Point: 9.1623

>NTDB_id=926420 VOI35_RS09190 WP_407275749.1 1971311..1972822(-) (comM) [Halothiobacillus sp. DCM-1]
MTIAKVFSRAQAGIDAPLITVEAHVANGLPSITLVGLPETVVRESRDRVRAAILSSGFEFPPRRLTINLAPADLPKEGAR
FDLPIALAILLVTGQIPGDPAEQAHRLAAMECVGELSLDGGVCGVRGALSAALGAQSAGRALFVPPANAEEATVVRGVQA
AAVPHLRALVAHVAGQRALPWLTAVTPPAVDPAAGIDLADVRGQPRAKRALALVAAGAHNLLLIGPPGAGKSMLAQRLPG
ILPPMTEAEAMESARIASASSLGFTAADFGRRRFRHPHHSASAVALIGGGSTPRPGEISLAHHGVLFLDELPEFDRRVLE
ALREPLENGVITISRAAQQVEFPARFQLVAAMNPSPQGEEVHSLAAQRYRARISGPLLDRIDIQLELPRVAAADLQPGGA
AEPSSSEVRAQVAAARAVMLARQAKSNAALLPAELAAVAPLAPRDAALLHQAMDKLRLSARAHDRILKVARTIADFDGKA
AIDTAALTEALGYRALDRLFSPS

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=926420 VOI35_RS09190 WP_407275749.1 1971311..1972822(-) (comM) [Halothiobacillus sp. DCM-1]
ATGACAATCGCCAAGGTATTTAGCCGCGCGCAAGCGGGGATCGATGCCCCGTTGATTACGGTCGAGGCGCATGTGGCTAA
CGGCTTGCCGAGCATCACCTTGGTGGGCTTGCCCGAAACCGTGGTGCGGGAAAGCCGCGATCGGGTGCGTGCGGCGATTT
TGTCCTCGGGGTTTGAGTTTCCGCCGCGTCGCCTGACCATCAATCTCGCACCGGCGGACTTGCCCAAAGAAGGTGCGCGG
TTTGATTTGCCGATTGCGCTCGCCATTTTATTGGTGACCGGGCAGATTCCCGGCGATCCCGCCGAGCAGGCCCATCGGTT
GGCCGCAATGGAGTGCGTGGGCGAGCTCTCGCTCGATGGGGGCGTTTGCGGCGTGCGCGGCGCGCTCTCGGCGGCATTGG
GTGCGCAGTCAGCGGGGCGAGCCTTGTTTGTGCCGCCCGCCAATGCCGAGGAGGCTACCGTGGTGCGCGGCGTGCAGGCT
GCAGCGGTGCCCCATTTGCGGGCATTGGTCGCACATGTCGCGGGGCAGCGCGCCTTACCTTGGCTCACGGCGGTAACGCC
GCCCGCCGTCGATCCGGCAGCCGGGATCGATCTGGCGGATGTGCGTGGACAGCCGCGCGCGAAACGAGCCTTGGCATTGG
TGGCGGCGGGCGCGCACAACCTGCTGCTGATCGGCCCGCCGGGGGCGGGCAAGAGTATGTTGGCGCAGCGTTTGCCGGGA
ATTTTGCCGCCAATGACCGAGGCGGAGGCGATGGAATCGGCACGGATTGCCTCGGCGTCGAGCCTGGGCTTTACGGCAGC
GGATTTCGGCCGCCGACGCTTCCGGCATCCGCATCACTCCGCCTCGGCGGTGGCGCTGATCGGCGGTGGTTCGACCCCGC
GGCCCGGCGAGATTTCGCTCGCGCATCACGGCGTGCTCTTTCTCGATGAACTCCCGGAATTCGACCGGCGGGTGCTCGAG
GCCTTGCGCGAGCCGCTGGAAAACGGCGTGATCACCATTTCCCGCGCGGCGCAGCAGGTGGAATTTCCGGCGCGGTTTCA
ACTGGTGGCGGCGATGAACCCGTCGCCGCAGGGCGAGGAGGTGCACTCGCTGGCCGCCCAGCGGTATCGGGCGCGAATTT
CCGGCCCGCTGCTCGACCGGATCGATATTCAATTGGAGCTGCCGCGCGTGGCGGCCGCCGATTTGCAACCTGGCGGTGCA
GCAGAGCCCTCGTCGTCGGAGGTGCGTGCGCAGGTGGCGGCGGCACGCGCCGTCATGCTGGCTCGCCAAGCTAAGTCCAA
TGCCGCGTTGTTGCCGGCGGAACTGGCCGCCGTGGCGCCGCTGGCGCCCCGCGATGCCGCGTTGCTGCATCAGGCGATGG
ATAAGCTGCGCCTCTCGGCGCGCGCGCATGACCGCATTCTGAAGGTGGCGCGCACGATTGCCGATTTCGACGGCAAGGCC
GCCATCGATACCGCCGCGCTCACTGAGGCGCTGGGGTATCGCGCTCTGGATCGGCTGTTCAGCCCGTCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-148)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.181

100

0.517
  comM Vibrio cholerae strain A1552

50.888

100

0.513
  comM Glaesserella parasuis strain SC1401

49.116

100

0.497
  comM Haemophilus influenzae Rd KW20

48.527

100

0.491
  comM Legionella pneumophila str. Paris

44.794

100

0.453
  comM Legionella pneumophila strain ERS1305867

44.794

100

0.453
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.58

100

0.445