Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OX462_RS24885 Genome accession   NZ_CP142524
Coordinates   5531522..5533042 (+) Length   506 a.a.
NCBI ID   WP_230506403.1    Uniprot ID   -
Organism   Janthinobacterium sp. SUN098     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5526522..5538042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX462_RS24860 (OX462_24860) gshA 5526708..5528006 (-) 1299 WP_070222828.1 glutamate--cysteine ligase -
  OX462_RS24865 (OX462_24865) - 5528210..5529748 (-) 1539 WP_409027291.1 ammonium transporter -
  OX462_RS24870 (OX462_24870) - 5529760..5530098 (-) 339 WP_010393464.1 P-II family nitrogen regulator -
  OX462_RS24875 (OX462_24875) - 5530110..5530877 (-) 768 WP_230506402.1 TorF family putative porin -
  OX462_RS24880 (OX462_24880) - 5531148..5531402 (+) 255 WP_070289926.1 accessory factor UbiK family protein -
  OX462_RS24885 (OX462_24885) comM 5531522..5533042 (+) 1521 WP_230506403.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OX462_RS24890 (OX462_24890) - 5533107..5533652 (+) 546 WP_099409725.1 hypothetical protein -
  OX462_RS24895 (OX462_24895) - 5533833..5534177 (+) 345 WP_070224486.1 DUF1840 domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54452.47 Da        Isoelectric Point: 8.4354

>NTDB_id=926052 OX462_RS24885 WP_230506403.1 5531522..5533042(+) (comM) [Janthinobacterium sp. SUN098]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRSPAGAPRAFILPQANADEAALVSDACIYP
AHSLLEVCAHFAAHGSQTALQRHQPMLAAHVFPYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDEEALESAAVHSLGGHFKVEHWKRRPYRAPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVINISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHSRLSGPLLDRIDLQIEVAAMPPAA
LGRHAGAGESTRAIATRVAAAFALQLARQGKANQRLSSTEIEQHCRLETHGEQLLHGAMARLHWSARTYHRVLRVARSIA
DLEASPGITQPHVAEAIQYRRVLREI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=926052 OX462_RS24885 WP_230506403.1 5531522..5533042(+) (comM) [Janthinobacterium sp. SUN098]
ATGAGTCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAAGCGCCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
CGGTTTGCCTTCGTTTACGATAGTCGGCCTGCCGGATACGGAAGTGAAGGAATCGCGCGACCGCGTCCGTGCCGCGCTGC
AAAACTGCGGCTTTGAGATGCCGGCGCGGCGCATCACGGCCAACCTGGCGCCGGCGGACTTGCCCAAGGAATCGGGGCGC
TTCGACCTGCCTATTGCCTTGGGTATCCTGGCCGCCTCGGGCCAGTTGCCGGGCGACCAATTACATCACTACGAATTCGC
GGGCGAACTGTCGCTCTCAGGCCAGTTGCGTCCCATTCGCGGCGCGCTGGCCATGACCTTTGCCATGCAGCGCAGCCCGG
CGGGCGCGCCACGCGCCTTCATCCTGCCGCAGGCGAACGCGGACGAGGCGGCGCTCGTCAGCGATGCCTGCATCTATCCC
GCCCACAGCCTGCTGGAAGTCTGCGCGCATTTTGCCGCGCACGGCAGCCAGACCGCCCTGCAACGCCATCAGCCCATGCT
GGCAGCGCACGTCTTTCCGTATCCCGACTTTGCCGACGTGCAAGGGCAGCAGCAGGCGCGGCGGGCGCTGGAAGTGGCGG
CCGCAGGCGGCCATAACGTCCTGATGGTCGGGCCGCCGGGCGCGGGCAAGACCATGCTGGCCAGCCGTTTTCCCGGCGTG
CTGCCGCCCATGAGCGACGAAGAGGCGCTGGAATCGGCTGCCGTGCATTCGCTGGGTGGCCACTTCAAGGTGGAACACTG
GAAACGCCGCCCCTACCGCGCCCCGCACCAGACGGCGTCCGGTGTGGCCCTGGTGGGCGGCGGCAATGTTCCGCGCCCCG
GAGAAATCTCGCTCGCGCACTGCGGCGTGCTGTTTCTCGATGAAATCGCCGAATTTCAGCGCCGGGTGCTCGATGTGTTG
CGCCAGCCCATGGAATCGGGCGTGATCAACATTTCACGCGCGGCCCGCCAGGCCGAGTTTCCTGCCCGCTTCCAGCTGAT
CGCCGCCATGAATCCCTGCCCGTGCGGTTATCTGGGCCACGCTTCGGGACGTTGCCGCTGCACGCCGGACGCCGTGCTCC
GTTATCACAGCCGCCTGTCCGGCCCGCTGCTCGACCGTATCGACCTGCAGATTGAAGTGGCCGCGATGCCGCCGGCGGCG
CTGGGCCGGCACGCCGGCGCCGGAGAAAGCACGCGAGCCATCGCCACAAGGGTAGCGGCAGCCTTTGCCCTGCAGCTGGC
GCGCCAGGGAAAGGCGAATCAGCGCCTGAGCAGCACGGAAATCGAACAGCATTGTCGCCTGGAAACGCATGGCGAACAGC
TGCTGCACGGCGCCATGGCGCGATTGCACTGGTCGGCGCGTACCTACCACCGCGTACTGCGCGTGGCGCGCAGCATCGCG
GACCTGGAGGCTAGCCCCGGCATCACACAGCCGCACGTCGCCGAAGCGATCCAGTACCGGCGCGTGCTGCGTGAAATATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.012

100

0.545
  comM Vibrio cholerae strain A1552

54.012

100

0.545
  comM Glaesserella parasuis strain SC1401

52.362

100

0.526
  comM Haemophilus influenzae Rd KW20

50.784

100

0.512
  comM Legionella pneumophila str. Paris

48.814

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.814

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445