Detailed information NTG0926023

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: OPV09_RS05550
• Genome accession: NZ_CP142523
• Coordinates: 1225687..1226826 (-)
• Length: 379 a.a.
• NCBI ID: WP_338680825.1
• Uniprot ID: -
• Organism: Janthinobacterium sp. TB1-E2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1220687..1231826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OPV09_RS05535 (OPV09_05535)	glcF	1221679..1222914 (+)	1236	WP_338680823.1	glycolate oxidase subunit GlcF	-
OPV09_RS05540 (OPV09_05540)	-	1222907..1225015 (-)	2109	WP_338680824.1	EAL domain-containing protein	-
OPV09_RS05545 (OPV09_05545)	-	1225200..1225685 (-)	486	WP_219329983.1	glutathione peroxidase	-
OPV09_RS05550 (OPV09_05550)	pilU	1225687..1226826 (-)	1140	WP_338680825.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
OPV09_RS05555 (OPV09_05555)	pilT	1226830..1227873 (-)	1044	WP_034749074.1	type IV pilus twitching motility protein PilT	Machinery gene
OPV09_RS05560 (OPV09_05560)	-	1227944..1228645 (+)	702	WP_338680826.1	YggS family pyridoxal phosphate-dependent enzyme	-
OPV09_RS05565 (OPV09_05565)	proC	1228662..1229492 (+)	831	WP_338680827.1	pyrroline-5-carboxylate reductase	-
OPV09_RS05570 (OPV09_05570)	-	1229496..1230212 (-)	717	WP_338680828.1	anti-sigma factor	-
OPV09_RS05575 (OPV09_05575)	-	1230209..1230784 (-)	576	WP_230518294.1	sigma-70 family RNA polymerase sigma factor	-
OPV09_RS05580 (OPV09_05580)	-	1230859..1231350 (-)	492	WP_139143513.1	DUF3455 domain-containing protein	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 40980.10 Da
• Isoelectric Point: 6.9059

>NTDB_id=926023 OPV09_RS05550 WP_338680825.1 1225687..1226826(-) (pilU) [Janthinobacterium sp. TB1-E2]
MQTTHEHYGAMHALLAQMRARGGSDLFITAGFPAAIKLDGKLTPLAGGALDAQQAAGYVRAVMNERQAAEFAASREANFA
ISPDGLGRFRVSAFVQMGQAGMVLRLINTAIPTLDGLGLPAILQDIVMSKRGLVIMVGATGCGKSTTLAAMVGHRNAHSH
GHIITIEDPVEFIHPHGNCIVTQREVGVDTDDWATALKNTLRQAPDVIQIGEIRDRDTMDHAIAFAETGHLCLATLHANN
ANQALDRIINFFPEERRQQLLMDLSLNLKGMISQRLIPNKEGGGRKAALEILLNSPLMSDLIFKGQVHEIKELMKKSREH
GMQTFDQALFDLHEAGAISYEDALRNADSVNDLRLTIKLKGATAPEPAPQTGATKLGLL

Nucleotide

• Length: 1140 bp

>NTDB_id=926023 OPV09_RS05550 WP_338680825.1 1225687..1226826(-) (pilU) [Janthinobacterium sp. TB1-E2]
ATGCAGACGACGCACGAACACTATGGCGCCATGCACGCGCTGCTGGCGCAGATGCGCGCACGGGGCGGCTCGGACCTGTT
CATCACGGCCGGCTTTCCTGCCGCCATCAAGCTCGACGGCAAACTGACGCCGCTGGCGGGCGGCGCGCTCGACGCGCAAC
AGGCGGCCGGCTACGTGCGCGCCGTCATGAACGAACGCCAGGCGGCCGAGTTCGCAGCCAGCCGCGAAGCCAATTTCGCC
ATCAGCCCGGACGGACTCGGGCGTTTCCGCGTGTCCGCCTTCGTGCAGATGGGCCAGGCAGGCATGGTCTTGCGCTTGAT
CAATACCGCCATCCCCACGCTCGATGGACTGGGTTTACCGGCCATCCTGCAAGACATCGTCATGAGCAAGCGGGGCCTCG
TCATCATGGTGGGCGCCACGGGCTGCGGCAAGTCGACCACCCTGGCCGCCATGGTGGGACACCGCAACGCGCACAGCCAT
GGCCACATCATCACCATCGAAGACCCCGTGGAATTCATCCATCCGCACGGCAACTGCATCGTCACCCAGCGCGAGGTGGG
CGTCGATACGGACGACTGGGCCACGGCCCTGAAAAACACCCTGCGCCAGGCGCCCGACGTGATCCAGATCGGAGAGATCC
GCGACCGCGACACGATGGACCACGCCATCGCGTTTGCCGAGACGGGCCATTTGTGCCTGGCCACCCTGCATGCGAACAAC
GCCAACCAGGCGCTGGACCGCATCATCAATTTCTTCCCCGAAGAGCGGCGCCAGCAGCTGCTGATGGACCTGTCGCTGAA
TTTGAAAGGCATGATTTCGCAGCGCCTGATTCCCAACAAGGAAGGCGGCGGGCGCAAGGCGGCGCTGGAAATCCTGCTCA
ATTCGCCGCTGATGAGCGACCTGATCTTCAAGGGCCAGGTGCACGAGATCAAGGAATTGATGAAAAAATCGCGCGAGCAC
GGCATGCAGACGTTCGACCAGGCCCTGTTCGACCTGCACGAAGCGGGCGCCATCAGCTATGAAGACGCGCTACGCAATGC
GGACTCCGTCAACGACCTGCGCCTGACGATCAAACTCAAGGGCGCAACGGCGCCGGAACCCGCCCCGCAAACGGGCGCCA
CCAAACTGGGACTCCTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (62-278)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	63.173	93.14	0.588
pilU	Acinetobacter baylyi ADP1	59.366	91.557	0.544
pilU	Vibrio cholerae strain A1552	56.851	90.501	0.515
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.119	86.28	0.372