Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OPV09_RS04835 Genome accession   NZ_CP142523
Coordinates   1072291..1073811 (-) Length   506 a.a.
NCBI ID   WP_319993454.1    Uniprot ID   -
Organism   Janthinobacterium sp. TB1-E2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067291..1078811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPV09_RS04825 (OPV09_04825) - 1071155..1071499 (-) 345 WP_034749443.1 DUF1840 domain-containing protein -
  OPV09_RS04830 (OPV09_04830) - 1071681..1072226 (-) 546 WP_219330374.1 hypothetical protein -
  OPV09_RS04835 (OPV09_04835) comM 1072291..1073811 (-) 1521 WP_319993454.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OPV09_RS04840 (OPV09_04840) - 1073923..1074171 (-) 249 WP_034749434.1 accessory factor UbiK family protein -
  OPV09_RS04845 (OPV09_04845) - 1074442..1075209 (+) 768 WP_034749431.1 TorF family putative porin -
  OPV09_RS04850 (OPV09_04850) - 1075221..1075559 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  OPV09_RS04855 (OPV09_04855) amt 1075571..1077106 (+) 1536 WP_034749427.1 ammonium transporter -
  OPV09_RS04860 (OPV09_04860) gshA 1077310..1078608 (+) 1299 WP_034749425.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54424.45 Da        Isoelectric Point: 8.2737

>NTDB_id=926021 OPV09_RS04835 WP_319993454.1 1072291..1073811(-) (comM) [Janthinobacterium sp. TB1-E2]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRSQPGAPRAFILPQANADEAALVSDACIYP
AHSLLEVCAHFAAHASRTVLQRHQPMLAVPDFAYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDEEALESAAVHSLGGLFKVEHWKRRPYRAPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHSRLSGPLLDRIDLQVEVAAMPPAA
LGRHAGAGESTQAIATRVAAAFALQLARQGKANQRLSSTEIEQHCRLETHGEQLLHGAMARLHWSARTYHRVLRVARSIA
DLADSPGITQAHVAEAIQYRRVLREI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=926021 OPV09_RS04835 WP_319993454.1 1072291..1073811(-) (comM) [Janthinobacterium sp. TB1-E2]
ATGAGTCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAAGCGCCCGAGGTAAGTGTTGAAGTCCACCTTGCCAA
TGGCTTGCCTTCGTTTACGATTGTCGGCCTGCCGGATACGGAAGTGAAGGAATCGCGCGACCGCGTCCGTGCCGCGCTGC
AAAACTGCGGCTTTGAAATGCCGGCGCGGCGCATCACGGCCAATCTGGCGCCGGCGGACTTGCCCAAGGAATCGGGGCGC
TTCGACCTGCCCATCGCGCTGGGCATCCTGGCCGCGTCCGGCCAGTTGCCGGGCGACCAATTACACCACTACGAATTCGC
GGGCGAACTGTCGCTGTCGGGCCAGTTGCGCCCTATCCGCGGCGCGCTGGCAATGACCTTTGCCATGCAGCGCAGCCAGC
CGGGCGCGCCACGCGCCTTCATCCTGCCGCAGGCGAACGCAGACGAAGCGGCTCTCGTCAGCGATGCCTGCATCTATCCT
GCCCACAGCCTGCTCGAGGTCTGCGCGCATTTTGCCGCGCACGCCAGCCGGACCGTCCTGCAACGCCACCAGCCCATGCT
GGCCGTACCCGATTTTGCGTATCCGGACTTTGCCGACGTGCAAGGACAGCAGCAGGCGCGCCGCGCACTGGAAGTGGCGG
CCGCGGGTGGCCATAACGTCCTGATGGTGGGGCCGCCGGGCGCGGGCAAGACCATGCTGGCCAGCCGCTTCCCCGGCGTG
CTGCCGCCCATGAGCGACGAAGAGGCGCTGGAATCGGCCGCCGTGCATTCGCTGGGCGGCCTCTTCAAGGTGGAACACTG
GAAACGGCGCCCCTACCGTGCCCCGCACCAGACGGCATCCGGCGTGGCCCTGGTGGGCGGCGGCAACGTGCCGCGCCCGG
GAGAAATCTCGCTGGCCCACTGCGGCGTGCTGTTTCTCGATGAAATCGCCGAATTCCAGCGCCGGGTGCTCGATGTGCTG
CGCCAGCCCATGGAATCGGGCGTGATCAGCATTTCACGCGCGGCCCGCCAGGCCGAGTTTCCTGCTCGCTTCCAGTTGAT
CGCCGCCATGAATCCCTGCCCCTGCGGTTATCTGGGCCATGCTTCGGGACGCTGCCGCTGCACGCCGGACGCCGTGCTCC
GTTATCACAGCCGCCTGTCCGGTCCGCTACTCGACCGTATCGACCTGCAGGTTGAAGTGGCCGCCATGCCGCCGGCGGCG
CTGGGGCGGCACGCAGGCGCCGGCGAAAGCACGCAAGCCATCGCCACGCGGGTCGCGGCAGCCTTTGCCCTGCAGCTGGC
ACGCCAGGGCAAAGCGAACCAGCGCCTGAGCAGCACGGAAATCGAACAACATTGTCGCCTGGAAACGCATGGTGAACAGC
TGCTGCATGGCGCCATGGCGCGACTGCACTGGTCGGCGCGCACCTATCACCGGGTATTGCGCGTGGCGCGCAGTATCGCG
GACCTGGCGGACAGCCCCGGCATCACGCAGGCGCATGTCGCCGAAGCGATCCAGTACCGGCGCGTGCTGCGTGAAATATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.725

100

0.541
  comM Vibrio cholerae strain A1552

52.941

100

0.534
  comM Glaesserella parasuis strain SC1401

51.677

100

0.518
  comM Haemophilus influenzae Rd KW20

50.787

100

0.51
  comM Legionella pneumophila str. Paris

49.109

99.802

0.49
  comM Legionella pneumophila strain ERS1305867

49.109

99.802

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443