NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	U6115_RS20575	Genome accession	NZ_CP142381
Coordinates	4313307..4314809 (-)	Length	500 a.a.
NCBI ID	WP_043579279.1	Uniprot ID	-
Organism	Chromobacterium subtsugae strain ATCC 31532
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4308307..4319809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6115_RS20550 (U6115_20550)	cyoA	4309705..4310598 (-)	894	WP_230623425.1	ubiquinol oxidase subunit II	-
U6115_RS20565 (U6115_20565)	-	4311845..4312456 (-)	612	WP_043579277.1	thiol:disulfide interchange protein DsbA/DsbL	-
U6115_RS20570 (U6115_20570)	-	4312485..4313243 (-)	759	WP_043579278.1	SPOR domain-containing protein	-
U6115_RS20575 (U6115_20575)	comM	4313307..4314809 (-)	1503	WP_043579279.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
U6115_RS20580 (U6115_20580)	-	4314816..4315103 (-)	288	WP_043579280.1	accessory factor UbiK family protein	-
U6115_RS20585 (U6115_20585)	glnK	4315441..4315779 (+)	339	WP_021478498.1	P-II family nitrogen regulator	-
U6115_RS20590 (U6115_20590)	-	4315807..4317117 (+)	1311	WP_043579281.1	ammonium transporter	-
U6115_RS20595 (U6115_20595)	-	4317239..4317658 (-)	420	WP_043579282.1	ClpXP protease specificity-enhancing factor	-
U6115_RS20600 (U6115_20600)	-	4317668..4318270 (-)	603	WP_043579283.1	glutathione S-transferase N-terminal domain-containing protein	-
U6115_RS20605 (U6115_20605)	-	4318421..4319185 (-)	765	WP_043579284.1	cytochrome c1	-

Sequence

Protein

Download Length: 500 a.a. Molecular weight: 52776.52 Da Isoelectric Point: 8.0879

                                >NTDB_id=925631 U6115_RS20575 WP_043579279.1 4313307..4314809(-) (comM) [Chromobacterium subtsugae strain ATCC 31532]

MTLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEFPARKITVNLAPADLPKDSGR

FDLPIAIGILLASGQVQNPDISRYEFAGELALSGAVRPVRGALAMACQCHAARRAFVLPAASAAEAAVVAEAQIYGVRSL

LEACAFLNGLQTLQPSVPADGGAWPNYPDLQDVKGQSAARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPRLSEQ

EALESAALLSLGSQGFLASNWRLRPFRAPHHTASAVALVGGGSDPRPGEISLAHHGVLFLDELPEFDRRVLEVLREPMES

GVIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQCTPEQVGRYRGKISGPLLDRIDLHIEVPALTAAELQSASP

GESSEQVRLRVHAARTCQLGRQGGLNSALQGAELERHCEASADALAVLGKALQQLGLSARAYHRILRVSRTIADLQGEAK

IGRSHVLQAIQLRRVMQGNA

Nucleotide

Download Length: 1503 bp

                                >NTDB_id=925631 U6115_RS20575 WP_043579279.1 4313307..4314809(-) (comM) [Chromobacterium subtsugae strain ATCC 31532]

ATGACATTGGCGGTGGTGGCGAGCAGGGCGCTGTCCGGGCTTGACGCCCCGGAGGTGGCCGTCGAGGTCCACCTCGCCAA

TGGCCTGCCGGCGTTCAATATCGTCGGCTTGCCCGATACCGAGGTCAAGGAAAGCCGCGACCGCGTGCGCGCCGCCATCT

TGACCTCGGGCTTCGAATTTCCCGCGCGCAAGATCACGGTCAATCTGGCCCCGGCCGATCTGCCCAAGGATTCCGGCCGT

TTCGACCTGCCGATCGCCATCGGCATCCTGCTGGCGTCCGGCCAAGTGCAAAATCCTGACATTTCCCGCTATGAATTCGC

CGGCGAGCTGGCGCTGAGCGGCGCCGTGCGCCCGGTGCGCGGCGCGTTGGCGATGGCCTGCCAGTGCCATGCGGCCCGCC

GCGCCTTCGTGCTGCCGGCTGCCAGCGCGGCAGAGGCCGCGGTGGTGGCGGAGGCGCAGATTTACGGGGTGCGTTCGCTG

CTGGAGGCCTGCGCGTTTCTCAACGGGCTGCAAACCTTGCAGCCCTCGGTTCCGGCTGACGGCGGAGCCTGGCCGAACTA

TCCGGATCTGCAGGATGTCAAAGGCCAGTCAGCGGCTCGCGGCGCGCTGGAGATCGCGGCCGCCGGCGGTCACAGCCTGC

TGCTGATGGGGCCGCCGGGCACCGGCAAGTCGATGCTGGCGGCGCGGCTGCCTGGCTTGTTGCCGCGGCTGTCCGAACAG

GAGGCGCTGGAGTCCGCTGCGCTGCTGTCGTTGGGCTCGCAAGGGTTTCTGGCCTCGAACTGGCGTTTGCGTCCGTTTCG

GGCGCCGCACCACACCGCTTCCGCGGTGGCGCTGGTGGGCGGCGGCAGCGACCCGCGGCCTGGCGAGATCAGCCTGGCGC

ACCACGGCGTGCTGTTTCTCGACGAGTTGCCGGAGTTCGACCGCCGCGTGCTGGAAGTGCTGCGCGAGCCGATGGAAAGC

GGGGTGATCCATATCTCGCGCGCGGCGCGCCAGGCCAGCTTTCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCATG

CCCCTGCGGCTATCATGGGCACCCATCGGGGCGCTGCCAGTGCACGCCCGAGCAGGTGGGGCGATATCGCGGTAAAATCT

CCGGCCCCTTGCTGGACAGAATCGACCTGCATATAGAGGTGCCGGCGCTGACGGCGGCCGAATTGCAGTCGGCCAGTCCG

GGCGAAAGCAGCGAGCAGGTGAGGTTGCGTGTGCATGCCGCCAGGACTTGCCAGCTGGGACGCCAGGGCGGCCTGAATTC

GGCCTTGCAAGGCGCGGAGCTGGAGCGGCACTGCGAGGCGAGCGCGGATGCCTTGGCCGTGCTGGGCAAGGCTTTGCAGC

AGCTTGGCTTGTCGGCGCGCGCTTATCATCGGATACTGCGGGTTTCGCGCACCATCGCGGACTTGCAAGGCGAGGCGAAG

ATAGGCCGCAGCCATGTATTGCAGGCGATCCAGCTCCGACGCGTGATGCAGGGCAACGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	54.509	99.8	0.544
comM	Vibrio campbellii strain DS40M4	52.727	99	0.522
comM	Haemophilus influenzae Rd KW20	51.503	99.8	0.514
comM	Glaesserella parasuis strain SC1401	50.701	99.8	0.506
comM	Legionella pneumophila str. Paris	50.1	99.8	0.5
comM	Legionella pneumophila strain ERS1305867	50.1	99.8	0.5
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.618	100	0.458

Detailed information NTG0925631