Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VP780_RS26240 Genome accession   NZ_CP142380
Coordinates   5651557..5653050 (+) Length   497 a.a.
NCBI ID   WP_327439207.1    Uniprot ID   -
Organism   Pseudomonas donghuensis strain ZF510     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5646557..5658050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP780_RS26210 (VP780_26210) - 5647071..5647766 (+) 696 WP_254282310.1 HAD family hydrolase -
  VP780_RS26215 (VP780_26215) sutA 5647855..5648181 (-) 327 WP_327439204.1 transcriptional regulator SutA -
  VP780_RS26220 (VP780_26220) - 5648645..5649976 (-) 1332 WP_010221118.1 ammonium transporter -
  VP780_RS26225 (VP780_26225) glnK 5650020..5650358 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  VP780_RS26230 (VP780_26230) - 5650688..5650951 (+) 264 WP_327439205.1 accessory factor UbiK family protein -
  VP780_RS26235 (VP780_26235) - 5650959..5651312 (+) 354 WP_327439206.1 gamma-glutamylcyclotransferase family protein -
  VP780_RS26240 (VP780_26240) comM 5651557..5653050 (+) 1494 WP_327439207.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VP780_RS26245 (VP780_26245) - 5653106..5654536 (+) 1431 WP_327439208.1 mechanosensitive ion channel family protein -
  VP780_RS26250 (VP780_26250) - 5654540..5655826 (-) 1287 WP_327439209.1 FAD-binding oxidoreductase -
  VP780_RS26255 (VP780_26255) - 5655956..5657446 (-) 1491 WP_327439210.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52749.39 Da        Isoelectric Point: 7.3466

>NTDB_id=925609 VP780_RS26240 WP_327439207.1 5651557..5653050(+) (comM) [Pseudomonas donghuensis strain ZF510]
MSLALVHSRAQVGVSAPAVSVEAHLANGLPALTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQFPIAALGEVECLGELALSGAIRSVQGVLPAALAARAAGRALVVPQENAEEACLASGLVVFAVSHL
LELVAHFNGQTPLNPYAANGLLLQIRPYPDLNEVQGQQAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVASHVPLSSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVAREATALSTSSSH
GESSATIAAQVAAARDIQQQRQGCANAFLDLPGLRQYCGLSTADQNWLESACERLTLSLRAAHRLLKVARTLADLEQAEN
IGRDHLAEALHYRPSNQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=925609 VP780_RS26240 WP_327439207.1 5651557..5653050(+) (comM) [Pseudomonas donghuensis strain ZF510]
ATGTCCCTCGCCCTTGTCCACAGCCGTGCCCAGGTCGGTGTTTCGGCCCCGGCGGTCAGTGTTGAAGCGCATCTGGCCAA
TGGTTTGCCGGCGCTGACCCTGGTTGGCCTGCCGGAAGCGACCGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCC
TCAATTCCGGCCTGGAATTCCCCGCCCGGCGCATCACCCTCAACCTCGCGCCAGCCGACCTGCCCAAGGATGGCGGGCGC
TTCGACCTGGCCATCGCCCTGGGGATTCTCGCCGCCAACGGCCAGTTCCCGATTGCAGCGCTTGGCGAGGTGGAATGCCT
GGGCGAACTGGCGCTGTCCGGGGCGATCCGCTCGGTGCAAGGTGTTCTGCCCGCAGCCTTGGCTGCACGAGCAGCCGGTC
GGGCCCTGGTCGTGCCGCAGGAAAATGCCGAAGAAGCCTGTCTGGCATCGGGGCTGGTGGTGTTTGCAGTCAGTCACCTG
CTGGAACTGGTCGCCCACTTCAACGGCCAGACCCCGCTCAACCCCTACGCTGCCAACGGCTTGTTGCTGCAGATCCGCCC
CTACCCCGACCTCAACGAAGTGCAAGGCCAGCAAGCCGCCAAGCGCGCGCTACTGGTTGCCGCCGCAGGCGCACACAACC
TGCTGTTCAGCGGCCCACCCGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCACTGGATGAA
CGTGAAGCGCTGGAGGTGGCGGCGATCCAGTCGGTGGCCAGCCACGTGCCGCTGAGCAGTTGGCCGCAGCGGCCGTTTCG
TCACCCGCACCATTCGGCCTCAGGTGCTGCGCTGGTCGGCGGTGGCAGCCGACCGCAGCCAGGAGAGATAACCCTGGCCC
ATCACGGCGTGCTGTTCCTCGATGAGCTGCCGGAGTTCGAGCGGCGCGTACTGGAAGTGCTGCGCGAACCGCTGGAATCC
GGCGAAATCGTCATCGCCCGGGCCAAGGACAAGATCCGCTTTCCGGCGCGCTTCCAGCTGGTCGCCGCCATGAACCCCTG
TCCCTGTGGATATCTTGGCGACCCCACCGGGCGCTGTCGCTGCAGCAGCGAACAGATCCAGCGTTACCGCAACAAACTCT
CCGGCCCCTTGCTCGACCGCATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACGGCACTGTCCACCAGCAGCAGCCAC
GGCGAAAGCAGCGCCACCATTGCCGCGCAAGTCGCCGCCGCCCGCGACATCCAGCAACAGCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGCCCGGCCTGCGCCAGTACTGCGGGTTATCCACAGCCGACCAGAACTGGCTGGAAAGCGCCTGCGAAC
GCCTGACCCTGTCGCTACGCGCCGCCCACCGCCTGCTCAAGGTCGCGCGTACTTTGGCTGACCTGGAACAGGCTGAAAAC
ATTGGCCGTGATCATCTGGCTGAAGCGCTGCACTATCGCCCCAGCAACCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.598

0.559
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.291

100

0.547
  comM Glaesserella parasuis strain SC1401

53.094

100

0.535
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.614

100

0.471