Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J54_RS13245 Genome accession   NZ_CP163444
Coordinates   2857233..2858966 (-) Length   577 a.a.
NCBI ID   WP_369144123.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2852233..2863966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS13230 (AB5J54_13230) - 2852559..2854655 (+) 2097 WP_369144121.1 molybdopterin oxidoreductase family protein -
  AB5J54_RS13235 (AB5J54_13235) cutA 2854642..2855361 (-) 720 WP_369144122.1 divalent cation tolerance protein CutA -
  AB5J54_RS13240 (AB5J54_13240) - 2855358..2857139 (-) 1782 Protein_2626 ABC transporter ATP-binding protein -
  AB5J54_RS13245 (AB5J54_13245) rcrP 2857233..2858966 (-) 1734 WP_369144123.1 ABC transporter ATP-binding protein Regulator
  AB5J54_RS13250 (AB5J54_13250) - 2859199..2859966 (+) 768 WP_369144124.1 aminotransferase class IV -
  AB5J54_RS13255 (AB5J54_13255) - 2859988..2861691 (+) 1704 WP_369144125.1 right-handed parallel beta-helix repeat-containing protein -
  AB5J54_RS13260 (AB5J54_13260) - 2861688..2862095 (+) 408 WP_369144126.1 hypothetical protein -
  AB5J54_RS13265 (AB5J54_13265) - 2862343..2862900 (+) 558 WP_369144127.1 hypothetical protein -
  AB5J54_RS13270 (AB5J54_13270) - 2862997..2863614 (+) 618 WP_369144128.1 class F sortase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62389.31 Da        Isoelectric Point: 9.7230

>NTDB_id=925609 AB5J54_RS13245 WP_369144123.1 2857233..2858966(-) (rcrP) [Streptomyces sp. R44]
MLFRLLVPRLRPYRTLLVLLVALQLVQTLASLALPTLNAGVIDHGVLRGDTGRVLSGGAAMIAVTLLQAAAAAAATYTGA
KVAMGAARDLRSEVFRRVQDFSARERGRFGAASLITRTTNDVQQIQTFTVLVLTMLVAAPLLCAGGLVMALRQDVPLALV
LFAFVPVMTGAVGTVVLRMRPLFRGMQERVDRANRVLREQITGVRVVRAFVRDRHERERFAEANDELLTVGLKAGRLQAL
MFPTVLIVWQLTTVALVYVGAHRIDAGALQPGGLVAFLGYLLQTSMSVMMVLFLLMHMPRAEAGAERVREVLDTRSSVTP
PAHPVRALPGTGRLDLDGVGFRYPGAEESVLHDIGLVARPGETTAVVGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
QVDPELMARTVGLVPQKPYLFSGTVATNLRYGRPDATDEELWHALEVAQAADFVRALDDGLDAPVSQGGTNFSGGQRQRL
AIARVLVARPRVYLFDDSFSALDPRTDARLRGALREETADATVVIVAQRVSTIRHADRIVVLDHGRTVGTGTHTSLMRDN
PTYREIVLSQLTEEEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=925609 AB5J54_RS13245 WP_369144123.1 2857233..2858966(-) (rcrP) [Streptomyces sp. R44]
ATGCTGTTCCGACTGCTCGTCCCCCGCCTCCGGCCGTACCGGACCCTCCTCGTCCTCCTCGTCGCCCTCCAGCTCGTCCA
GACCCTCGCCTCCCTCGCCCTGCCCACCCTCAACGCCGGCGTCATCGACCACGGCGTCCTGCGCGGCGACACCGGCCGCG
TCCTCTCCGGCGGCGCCGCGATGATCGCGGTCACCCTCCTCCAGGCCGCCGCGGCCGCCGCCGCCACCTACACCGGCGCC
AAGGTCGCCATGGGCGCCGCCCGCGACCTGCGCTCCGAGGTCTTCCGCCGGGTCCAGGACTTCTCCGCCCGCGAGCGCGG
CCGTTTCGGCGCCGCCTCCCTCATCACCCGCACCACCAACGACGTCCAGCAGATCCAGACCTTCACCGTCCTCGTCCTCA
CCATGCTGGTCGCCGCCCCGCTGCTCTGCGCCGGCGGACTCGTCATGGCCCTGCGCCAGGACGTGCCGCTCGCGCTCGTC
CTGTTCGCCTTCGTGCCCGTGATGACCGGCGCCGTCGGCACCGTCGTGCTGCGCATGCGGCCCCTCTTCCGCGGCATGCA
GGAGCGCGTCGACCGGGCCAACCGCGTGCTGCGCGAACAGATCACGGGCGTCCGGGTCGTCCGCGCCTTCGTCCGCGACC
GCCACGAGCGGGAACGATTCGCCGAGGCCAACGACGAACTCCTCACCGTCGGCCTCAAGGCCGGCCGGCTCCAGGCCCTC
ATGTTCCCGACGGTCCTGATCGTCTGGCAGCTCACGACCGTCGCCCTCGTGTACGTCGGCGCCCACCGCATCGACGCCGG
CGCCCTCCAGCCGGGCGGCCTCGTCGCCTTCCTCGGCTACCTCCTCCAGACCTCCATGTCCGTGATGATGGTCCTCTTCC
TGCTCATGCACATGCCGCGCGCCGAAGCCGGCGCCGAGCGCGTCCGCGAGGTCCTCGACACCCGCTCCTCCGTCACCCCG
CCCGCCCACCCCGTCCGGGCCCTCCCGGGCACCGGCCGCCTCGACCTCGACGGCGTCGGCTTCCGCTACCCGGGTGCCGA
GGAGTCCGTCCTCCACGACATCGGGCTCGTCGCCCGCCCCGGCGAGACCACCGCCGTCGTCGGCTCCACCGGCAGCGGCA
AGTCGACCCTCCTCGGGCTCGTGCCCCGGCTCTTCGACGCCACCGACGGCGAGGTCCTCGTCGACGGCGTCGACGTCCGG
CAGGTCGACCCGGAACTGATGGCACGGACCGTCGGACTCGTCCCCCAGAAGCCGTACCTCTTCTCCGGCACGGTGGCGAC
GAACCTCCGCTACGGCCGACCCGACGCCACCGACGAGGAGCTCTGGCACGCCCTGGAGGTCGCCCAGGCCGCCGACTTCG
TCCGCGCGCTCGACGACGGCCTCGACGCCCCCGTCTCCCAGGGCGGCACCAACTTCTCCGGCGGCCAGCGCCAGCGCCTC
GCCATCGCCCGCGTGCTCGTCGCCCGCCCCCGCGTCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACCCCCGCACCGA
CGCCCGGCTCCGCGGCGCCCTGCGCGAGGAGACCGCCGACGCGACCGTCGTCATCGTCGCCCAGCGCGTCTCCACCATCC
GGCACGCCGACCGGATCGTCGTCCTCGACCACGGCCGCACCGTCGGCACCGGCACCCACACGTCCCTCATGCGGGACAAC
CCCACCTACCGGGAGATCGTCCTCTCCCAGCTCACCGAGGAGGAAGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.42

100

0.373