Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB5J49_RS33795 Genome accession   NZ_CP163439
Coordinates   7499670..7501295 (+) Length   541 a.a.
NCBI ID   WP_369172643.1    Uniprot ID   -
Organism   Streptomyces sp. R28     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7494670..7506295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J49_RS33765 (AB5J49_33765) lepB 7495347..7496438 (+) 1092 WP_369172639.1 signal peptidase I -
  AB5J49_RS33770 (AB5J49_33770) lepB 7496326..7497294 (+) 969 WP_369172640.1 signal peptidase I -
  AB5J49_RS33775 (AB5J49_33775) lepB 7497439..7498215 (+) 777 WP_369172641.1 signal peptidase I -
  AB5J49_RS33780 (AB5J49_33780) - 7498337..7498813 (+) 477 WP_369175350.1 NUDIX hydrolase -
  AB5J49_RS33785 (AB5J49_33785) - 7498870..7499178 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  AB5J49_RS33790 (AB5J49_33790) - 7499306..7499668 (+) 363 WP_369172642.1 YraN family protein -
  AB5J49_RS33795 (AB5J49_33795) comM 7499670..7501295 (+) 1626 WP_369172643.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB5J49_RS33800 (AB5J49_33800) dprA 7501292..7502452 (+) 1161 WP_369172644.1 DNA-processing protein DprA -
  AB5J49_RS33805 (AB5J49_33805) whiG 7502758..7503600 (+) 843 WP_369172645.1 RNA polymerase sigma factor WhiG -
  AB5J49_RS33810 (AB5J49_33810) - 7503696..7504253 (+) 558 WP_369175351.1 TetR/AcrR family transcriptional regulator -
  AB5J49_RS33815 (AB5J49_33815) - 7504495..7505058 (-) 564 WP_369172646.1 murein hydrolase activator EnvC -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56495.80 Da        Isoelectric Point: 6.4347

>NTDB_id=925292 AB5J49_RS33795 WP_369172643.1 7499670..7501295(+) (comM) [Streptomyces sp. R28]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLSESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLADEPVPDEEPDDLGRPDPLLAGLRVPGTGAATGIHSMGAAAPDHGHDLADVVGQMSARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAILPRLGREESLEVTAVHSVAGLLPPGRPMIDVAPYCAPHHSATMQALVGGGQGIARPGAVSL
SHRGVLFLDETPEFSSQALDALRQPLEAGHVVIARSAGVVRFPAKFLMVLAANPCPCGRFSQTGDLCECPPSAIRRYQAR
LSGPLLDRVDLRVEVDRVTRAQLTERGARGESTATVADRVRAARERAWARLAGTPWRTNSEVPGRELRSRWYASTGAMDE
AERNLERGVLTARGLDRVLRVAWTVADLVGHDRPDATDVALALQLRTGVPRGVPMAIGALT

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=925292 AB5J49_RS33795 WP_369172643.1 7499670..7501295(+) (comM) [Streptomyces sp. R28]
ATGGGGTTCGCGCGTACGTGCTCGGTGGCCCTGGTGGGCGTCGAGGGGGTCGTGGTCGAGGTTCAGGCGGACCTGGAGCC
GGGGGTGGCGGCGTTCACCTTGGTGGGGCTGCCGGACAAGAGCCTGTCGGAGAGCCGGGACCGGGTTCGGGCGGCCGTCG
TGAACTCGGGCGGCGAGTGGCCGCAGAAGAAGCTCACCGTCGGGCTCAGCCCGGCATCGGTGCCCAAGGCGGGCAGCGGT
TTTGATCTGGCCGTCGCATGCGCCGTCCTCGGCGCCGCCGAGCGGATCGACCCGCGGGTTCTCGCGGACATCGTGATGAT
CGGAGAGCTCGGCCTGGACGGACGGGTACGTCCCGTCCGGGGCATCCTGCCCGCCGTGCTGGCCGCGGCCGACGCCGGGT
ACGAGCAGGTGGTCGTCCCGGAGTGCGCCGCGGCCGAGGCCTCGCTGGTGCCGGGTGTGTCCGTACTGGGAGTGCGCAGC
CTGCGCCAGCTGATCGCCGTCCTCGCGGACGAACCGGTACCCGATGAGGAACCCGATGACCTGGGCCGGCCGGATCCGCT
GCTCGCGGGTCTGCGGGTGCCCGGGACGGGTGCGGCCACGGGCATCCACAGCATGGGAGCCGCCGCGCCCGACCATGGGC
ACGACCTGGCCGATGTGGTGGGCCAGATGTCGGCGCGTACGGCCGTGGAGGTCGCCGCGGCAGGCGGGCATCACCTGTTC
CTGGAGGGTCCGCCGGGTGCCGGCAAGACGATGCTCGCGGAGCGGCTGCCGGCCATCCTGCCCCGGCTCGGCAGGGAGGA
GTCGCTGGAGGTCACGGCGGTCCACTCGGTGGCGGGACTGCTGCCTCCGGGCAGGCCCATGATCGACGTGGCTCCCTACT
GCGCCCCGCACCACTCGGCGACGATGCAGGCGCTCGTCGGCGGTGGCCAGGGCATCGCGCGGCCCGGCGCGGTGTCCCTG
TCCCACCGGGGTGTCCTCTTTCTGGACGAGACGCCGGAGTTCAGCAGTCAGGCCCTCGACGCCCTGCGGCAGCCCCTGGA
AGCCGGGCATGTCGTCATCGCGCGCAGCGCGGGCGTGGTGCGCTTCCCGGCGAAGTTCCTGATGGTGCTGGCGGCCAATC
CCTGCCCCTGTGGCCGTTTCTCCCAGACGGGCGACCTGTGCGAGTGCCCGCCCTCGGCGATCCGCCGCTATCAGGCACGG
TTGTCCGGGCCGCTGCTCGACCGGGTCGACCTGCGGGTCGAGGTGGACCGTGTCACGCGCGCCCAGCTGACCGAGCGCGG
GGCCCGGGGAGAGTCCACCGCGACGGTCGCGGACCGGGTGCGGGCAGCTCGGGAGCGGGCGTGGGCCCGGCTCGCCGGTA
CGCCGTGGCGGACGAACAGCGAGGTCCCCGGACGTGAGCTGCGCAGCCGTTGGTACGCCTCGACCGGCGCCATGGACGAG
GCGGAACGGAACCTGGAGCGCGGCGTACTGACAGCCCGCGGGCTCGACCGCGTCCTGCGCGTCGCCTGGACCGTCGCCGA
CCTCGTCGGTCACGACCGGCCGGACGCGACGGACGTCGCCCTGGCCCTGCAACTGCGCACCGGTGTGCCGCGCGGCGTGC
CCATGGCCATCGGGGCGCTGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.114

97.227

0.39
  comM Vibrio cholerae strain A1552

40.114

97.227

0.39
  comM Vibrio campbellii strain DS40M4

39.924

97.227

0.388
  comM Acinetobacter baylyi ADP1

39.53

94.455

0.373
  comM Haemophilus influenzae Rd KW20

37.079

98.706

0.366
  comM Glaesserella parasuis strain SC1401

36.981

97.967

0.362
  comM Legionella pneumophila strain ERS1305867

36.654

98.336

0.36
  comM Legionella pneumophila str. Paris

36.654

98.336

0.36