Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VKP40_RS08550 Genome accession   NZ_CP142355
Coordinates   1723084..1723797 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain A946     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718084..1728797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP40_RS08540 (VKP40_08540) treC 1719153..1720781 (-) 1629 WP_021733072.1 alpha,alpha-phosphotrehalase -
  VKP40_RS08545 (VKP40_08545) treP 1720849..1722873 (-) 2025 WP_326675767.1 PTS system trehalose-specific EIIBC component -
  VKP40_RS08550 (VKP40_08550) treR 1723084..1723797 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  VKP40_RS08555 (VKP40_08555) - 1724077..1724415 (-) 339 Protein_1629 winged helix-turn-helix transcriptional regulator -
  VKP40_RS08560 (VKP40_08560) - 1724601..1725458 (+) 858 WP_136293790.1 VOC family protein -
  VKP40_RS08565 (VKP40_08565) yaaA 1725500..1726231 (+) 732 WP_326675768.1 peroxide stress protein YaaA -
  VKP40_RS08570 (VKP40_08570) nrdG 1726405..1727019 (-) 615 WP_021775544.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  VKP40_RS08575 (VKP40_08575) - 1727034..1727528 (-) 495 WP_011055085.1 GNAT family N-acetyltransferase -
  VKP40_RS08580 (VKP40_08580) - 1727537..1728472 (-) 936 WP_111686419.1 Gfo/Idh/MocA family protein -
  VKP40_RS08585 (VKP40_08585) - 1728501..1728647 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=925292 VKP40_RS08550 WP_002992823.1 1723084..1723797(+) (treR) [Streptococcus pyogenes strain A946]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=925292 VKP40_RS08550 WP_002992823.1 1723084..1723797(+) (treR) [Streptococcus pyogenes strain A946]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCTCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675