Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J56_RS30385 Genome accession   NZ_CP163435
Coordinates   6823174..6825102 (-) Length   642 a.a.
NCBI ID   WP_369237059.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6818174..6830102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS30370 (AB5J56_30370) - 6818429..6819694 (+) 1266 WP_369237053.1 NAD(P)/FAD-dependent oxidoreductase -
  AB5J56_RS30375 (AB5J56_30375) dnaG 6819741..6821642 (+) 1902 WP_369237055.1 DNA primase -
  AB5J56_RS30380 (AB5J56_30380) - 6821813..6823123 (+) 1311 WP_369237057.1 RNA polymerase sigma factor -
  AB5J56_RS30385 (AB5J56_30385) rcrQ 6823174..6825102 (-) 1929 WP_369237059.1 ABC transporter ATP-binding protein Regulator
  AB5J56_RS30390 (AB5J56_30390) rcrP 6825102..6826835 (-) 1734 WP_369237061.1 ABC transporter ATP-binding protein Regulator
  AB5J56_RS30395 (AB5J56_30395) - 6826991..6828445 (-) 1455 WP_369237063.1 FGGY family carbohydrate kinase -
  AB5J56_RS30400 (AB5J56_30400) - 6828551..6828856 (-) 306 WP_369237065.1 YtxH domain-containing protein -
  AB5J56_RS30420 (AB5J56_30420) - 6829545..6829964 (-) 420 WP_369237067.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69492.03 Da        Isoelectric Point: 6.1454

>NTDB_id=925201 AB5J56_RS30385 WP_369237059.1 6823174..6825102(-) (rcrQ) [Streptomyces sp. R21]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLLAQFKPERATLYGMLVAVVLSVGLSVVGPKILGRATDLVFAGIVGRQMPAGA
TKEQVLDSMRRRGEGGVADMLSGTDFTPGKGIDFDAVGNVLLLALGTFLVAGLLMAVATRLVNRAVNKTVYRMREDMQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSMLTIIGVLVMMFWVSWLLALVALVTVPLSFYVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQDESAAQFAEQNDKLYEAGFKAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVATGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGADPMPGARPDELRGRVALE
NVSFRYDPDKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVATMSRDDLRAAIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGTHTDLLAADAAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=925201 AB5J56_RS30385 WP_369237059.1 6823174..6825102(-) (rcrQ) [Streptomyces sp. R21]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGCTCGATGGACTTCAAGGGGTCCGGAAAGCG
GCTCCTCGCCCAGTTCAAGCCCGAACGCGCCACCCTGTACGGGATGCTCGTCGCCGTGGTCCTGAGCGTGGGCCTCTCGG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACGGACCTCGTCTTCGCCGGGATCGTCGGGCGTCAGATGCCGGCCGGTGCC
ACCAAGGAGCAGGTCCTCGACTCCATGCGCAGGCGGGGCGAGGGCGGCGTCGCCGACATGCTCTCGGGCACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCGACGCGGTCGGCAACGTACTGCTGCTCGCGCTCGGTACGTTCCTGGTGGCCGGCCTGC
TGATGGCGGTCGCCACCCGCCTGGTGAACCGCGCGGTCAACAAGACGGTCTACCGGATGCGCGAGGACATGCAGGCGAAG
CTGTCCCGCCTCCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTCCTCAGCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGATGCTGACGATCATCGGCGTACTGGTGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTCGTGGCGCTGGTCACCGTGCCGCTCTCCTTCTACGTCGCCACCCGCGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGTACGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGACAAGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGAGTCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTATGTGCTGGTCGCG
GTCGTCGGCGGGCTGCGGGTGGCGACGGGCGCGCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCCATGCCGCTGACCCAGGTCGCGTCCATGGCGAACCTGGTGCAGTCCGGAGTCGCCTCCGCCGAGCGGATCTTCGAGC
TCCTCGACGCCGAGGAGCAGGGCGCGGACCCCATGCCGGGAGCCAGGCCGGACGAACTGCGCGGACGGGTCGCCCTGGAG
AACGTGTCGTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGAAGGTCGAGCCCGGACACACGGTCGC
CATCGTCGGCCCGACCGGGGCCGGCAAGACCACCCTCGTCAACCTGCTCATGCGGTTCTACGAGGTCACCGGCGGGCGCA
TCACGCTCGACGGGGTCGATGTCGCCACCATGTCCCGGGACGACCTGCGGGCAGCGATCGGCATGGTCCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCGCGGGACGTGACGCGCGGCGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCATCCGGACACTGCCCGACGGGTACGACACCGTCATCGACGACGAGGGCACAG
GAGTGAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACGAGTTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTCATCGCGCACCGGCTGTCGACGATCCGCGACGCCGACACGATCCTCGTGATGGAGAACGGGGCGATCGTGGAGCAGG
GCACCCACACGGACCTGCTGGCGGCGGACGCGGCGTACGCCCGGCTGTACAAGGCGCAGTTCGCGCAGGCCGTCGCGGAA
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.193

96.885

0.389