Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J56_RS30390 Genome accession   NZ_CP163435
Coordinates   6825102..6826835 (-) Length   577 a.a.
NCBI ID   WP_369237061.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6820102..6831835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS30380 (AB5J56_30380) - 6821813..6823123 (+) 1311 WP_369237057.1 RNA polymerase sigma factor -
  AB5J56_RS30385 (AB5J56_30385) rcrQ 6823174..6825102 (-) 1929 WP_369237059.1 ABC transporter ATP-binding protein Regulator
  AB5J56_RS30390 (AB5J56_30390) rcrP 6825102..6826835 (-) 1734 WP_369237061.1 ABC transporter ATP-binding protein Regulator
  AB5J56_RS30395 (AB5J56_30395) - 6826991..6828445 (-) 1455 WP_369237063.1 FGGY family carbohydrate kinase -
  AB5J56_RS30400 (AB5J56_30400) - 6828551..6828856 (-) 306 WP_369237065.1 YtxH domain-containing protein -
  AB5J56_RS30420 (AB5J56_30420) - 6829545..6829964 (-) 420 WP_369237067.1 hypothetical protein -
  AB5J56_RS30425 (AB5J56_30425) - 6830198..6830473 (-) 276 WP_369237069.1 STAS domain-containing protein -
  AB5J56_RS30430 (AB5J56_30430) - 6830878..6831315 (-) 438 WP_369237071.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62561.77 Da        Isoelectric Point: 6.8309

>NTDB_id=925202 AB5J56_RS30390 WP_369237061.1 6825102..6826835(-) (rcrP) [Streptomyces sp. R21]
MLIRLLRTHLSPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMVGISLAQVVCNMGAVYFGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSSV
LIAVVPVLGISVTVIVRRLRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRGANTELTEVSLGTGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRINSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVVELRRHGHLEIRGAGFRYPGAEEPVLKAIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TVEPRLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVQGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAHETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=925202 AB5J56_RS30390 WP_369237061.1 6825102..6826835(-) (rcrP) [Streptomyces sp. R21]
GTGCTCATACGACTTCTGCGAACCCATCTCAGTCCGTACCGGAAACCCATCGCCCTGCTGGTCCTGCTCCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTCAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGCTACA
TCCTGTCCTTCGGCGCCCTGATGGTCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATGGGGGCCGTCTACTTCGGCGCC
CGTACGGCGTCGGCGGTCGGCCGGGACATCAGGGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
CCACTTCGGTGCGCCGTCGCTGATCACCCGCACCACGAACGACGTGCAGCAGGTGCAGATGCTCACGCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCCTCGCCCTCGGCCTGGACGTGCCGCTGTCCAGCGTG
CTGATCGCCGTGGTGCCGGTGCTCGGCATCAGCGTGACGGTGATCGTGCGGCGGCTGCGCCCGCTGTTCCGGAAGATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
ACTACGAGAAGGAGCGCTTCCGGGGCGCGAACACCGAGCTGACCGAGGTGTCCCTGGGCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCCCACCGCATCAACAGCGG
GGGCATGCAGATCGGTGACCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTCGACACCTCCAGCAGTGTCGTGCCC
CCGACCGCTCCCGTCGTGGAGCTGCGCCGCCACGGCCACCTGGAGATCCGGGGCGCGGGCTTCCGTTACCCGGGCGCCGA
GGAGCCGGTGCTCAAGGCCATCGACCTGGTGGCGCGGCCCGGCGAGACCACGGCCGTCATCGGGTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTCCCGCGGCTGTTCGACGCCACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTGGCC
ACCGTCGAGCCCCGGCTGCTCGCGAAGACCGTGGGCCTCGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAAGAGCTGTGGCACGCGCTGGAGGTCGCACAGGCCAAGGGGTTCG
TCCAGGGACTGGAGAACGGCCTCGACTCCCCCATCGCCCAGGGCGGGACGAACGTCTCGGGCGGTCAGCGCCAGCGCCTG
GCGATCGCCCGCACCCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCCCTGCGCGCCGCGCTCGCCCACGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGCGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTGGACGAGGGCCGCGTCGTCGGCACCGGCCGCCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.243

100

0.395