Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB5J48_RS28475 Genome accession   NZ_CP163433
Coordinates   6398228..6400492 (-) Length   754 a.a.
NCBI ID   WP_031064468.1    Uniprot ID   -
Organism   Streptomyces sp. R17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6393228..6405492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J48_RS28450 (AB5J48_28450) - 6393791..6394831 (+) 1041 WP_006129897.1 LacI family DNA-binding transcriptional regulator -
  AB5J48_RS28455 (AB5J48_28455) - 6394942..6395736 (+) 795 WP_006129898.1 VOC family protein -
  AB5J48_RS28460 (AB5J48_28460) - 6395898..6396146 (+) 249 WP_006129899.1 WhiB family transcriptional regulator -
  AB5J48_RS28465 (AB5J48_28465) - 6396164..6397138 (-) 975 WP_006129900.1 acyl-ACP desaturase -
  AB5J48_RS28470 (AB5J48_28470) ddaH 6397296..6398072 (-) 777 WP_369153116.1 dimethylargininase -
  AB5J48_RS28475 (AB5J48_28475) uvrA 6398228..6400492 (-) 2265 WP_031064468.1 excinuclease ABC subunit UvrA Machinery gene
  AB5J48_RS28480 (AB5J48_28480) - 6400503..6402125 (-) 1623 WP_031022655.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB5J48_RS28485 (AB5J48_28485) - 6402448..6403062 (+) 615 WP_369153119.1 GPP34 family phosphoprotein -
  AB5J48_RS28490 (AB5J48_28490) - 6403173..6403586 (-) 414 WP_006129906.1 SsgA family sporulation/cell division regulator -
  AB5J48_RS28495 (AB5J48_28495) - 6403875..6404936 (+) 1062 WP_189482484.1 oxidoreductase -
  AB5J48_RS28500 (AB5J48_28500) - 6405039..6405362 (+) 324 WP_006129908.1 hypothetical protein -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 80798.58 Da        Isoelectric Point: 6.7189

>NTDB_id=925133 AB5J48_RS28475 WP_031064468.1 6398228..6400492(-) (uvrA) [Streptomyces sp. R17]
MTQQDAFITITGATENNLKDVSLRIPKGRLTVFTGVSGSGKSSVVFDTIAVESQRQLNETYSWFVRNRLPKYERPHARAL
EHLTPVIVVDQRPVGGHSRSTVGTMTDVHSVLRVLYSRHGVPSAGPATAYSFNDPSGMCPGCDGLGRTVRPDWDRILDPD
RSLAEGAVRFPPFAPGTWQGQAYTNSEDLDPHKPVRHFTPAERKFLMRGRPGSKVTVQGTGGTWTTDYEGLADRFERLYL
KRDLEGMSQKTRDLVRGFLTEGVCPDCGGARLNRAALASLIDGRSIADLSAMQVCDLIPVLRKIDDPVAGPVAAAAVAAL
ERIDRIGLGYLSLDRETSTLSGGEGQRLKTVRHLGSSLSGMTYVFDEPSVGLHPRDVHRLGELLLRLRDKGNTVLVVEHD
PDVIALADHVVDMGPGGGAEGGTVVFEGTPPELAASGTLTGRCLGRRTEVKTQVRRPNGELWVKGADRHNLRDVTVCFPA
GVLTAVTGVAGSGKSTLVAEFTGAHPDAVVVDQSAIGISGRSTPATYLGVMDTVRKIFARETGAEPGLFSFNSTGACETC
GGRGILYTDLAFMDPVTTTCPDCEGRRFGEEVLRLTVGGRSVADVLEMTAGEALDFFDDPGVRRRLRALRDVGLTYLTLG
QPLSTLSGGERQRLKLATRLHRDGAVFVLDEPTTGLHMADVDGLLALLDRLVDAGNTVVVVEHNLAVVAHADRVIDLGPG
GGRDGGRVLFEGTPAELLNAPGSFTGEHLRRAVG

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=925133 AB5J48_RS28475 WP_031064468.1 6398228..6400492(-) (uvrA) [Streptomyces sp. R17]
ATGACCCAGCAGGACGCCTTCATCACCATCACCGGGGCCACGGAGAACAACCTCAAGGACGTCTCGCTCCGCATCCCGAA
AGGCCGGCTGACCGTGTTCACCGGCGTCTCGGGATCGGGCAAGTCGTCGGTCGTGTTCGACACGATCGCGGTCGAGTCGC
AGCGGCAGCTGAACGAGACGTACTCCTGGTTCGTGCGCAACCGGCTGCCGAAGTACGAGCGGCCGCACGCGCGGGCGCTG
GAGCACCTGACCCCGGTGATCGTCGTCGACCAGCGTCCGGTGGGCGGCCACTCCCGGTCGACGGTGGGCACGATGACGGA
CGTGCACTCGGTGCTGCGGGTGCTGTACTCCCGGCACGGCGTCCCGAGCGCGGGCCCGGCGACCGCGTACTCGTTCAACG
ACCCGTCGGGCATGTGTCCCGGCTGCGACGGGCTGGGCCGGACCGTGCGGCCGGACTGGGACCGCATCCTCGACCCGGAC
CGCTCCCTCGCCGAGGGCGCGGTCCGGTTCCCGCCGTTCGCGCCGGGCACCTGGCAGGGGCAGGCGTACACCAACAGCGA
GGACCTCGACCCGCACAAGCCGGTGCGTCACTTCACGCCCGCCGAGCGGAAGTTCCTGATGCGGGGGCGGCCCGGCAGCA
AGGTCACCGTGCAGGGCACGGGCGGCACCTGGACCACGGACTACGAAGGGCTGGCCGACCGGTTCGAACGGCTGTATCTC
AAGCGGGACCTGGAGGGGATGAGCCAGAAGACCCGTGACCTGGTGCGGGGCTTCCTCACCGAGGGCGTCTGCCCCGACTG
CGGCGGCGCCCGGCTGAACCGGGCGGCGCTGGCCTCCCTGATCGACGGCAGGAGCATCGCCGACCTGTCGGCGATGCAGG
TGTGCGACCTGATCCCGGTGCTGCGGAAGATCGACGACCCGGTGGCCGGGCCGGTCGCCGCGGCGGCCGTCGCCGCGCTG
GAGCGGATCGACCGCATCGGCCTCGGCTACCTCTCCCTCGACCGGGAGACGTCCACGCTCTCCGGCGGCGAGGGCCAGCG
CCTGAAGACCGTACGGCACCTGGGCTCCAGCCTGTCCGGGATGACGTACGTGTTCGACGAGCCGAGCGTCGGGCTGCATC
CGCGTGACGTGCACCGGCTGGGCGAACTGCTGCTGCGGCTGCGGGACAAGGGCAACACCGTGCTGGTCGTCGAGCACGAT
CCGGACGTCATCGCGCTGGCGGACCACGTCGTCGACATGGGTCCCGGCGGGGGCGCCGAGGGCGGCACGGTCGTCTTCGA
GGGGACGCCGCCGGAGCTGGCCGCCTCCGGCACCCTGACGGGACGCTGCCTCGGCCGGCGTACCGAGGTGAAGACCCAGG
TACGGCGGCCGAACGGCGAGTTGTGGGTGAAGGGCGCGGACCGGCACAACCTGCGGGACGTCACCGTGTGCTTCCCGGCC
GGGGTGCTGACCGCGGTGACCGGGGTGGCGGGGTCCGGGAAGAGCACGCTGGTCGCCGAGTTCACCGGCGCGCACCCCGA
CGCGGTGGTGGTCGACCAGTCGGCCATCGGCATCTCCGGGCGGTCCACCCCGGCGACGTACCTCGGGGTCATGGACACCG
TGCGGAAGATCTTCGCGCGGGAGACGGGCGCGGAGCCGGGGCTGTTCAGCTTCAACTCCACCGGCGCGTGCGAGACCTGC
GGCGGGCGGGGCATCCTTTACACCGACCTGGCGTTCATGGACCCGGTGACCACCACCTGCCCGGACTGCGAGGGGCGCCG
GTTCGGCGAGGAGGTGCTGCGGCTGACCGTCGGCGGGCGCTCGGTCGCCGACGTGCTGGAGATGACGGCGGGCGAGGCGC
TGGACTTCTTCGACGACCCGGGCGTACGGCGGCGGCTGCGCGCCCTGCGGGACGTCGGCCTCACCTACCTCACGCTGGGC
CAGCCGCTGTCCACCCTGTCCGGCGGGGAGCGGCAGCGGCTGAAGCTGGCCACGCGGCTGCACCGGGACGGCGCGGTGTT
CGTGCTGGACGAGCCGACGACCGGGCTGCACATGGCGGACGTGGACGGGCTGCTCGCCCTGCTGGACCGGCTGGTCGACG
CGGGCAACACGGTGGTGGTGGTCGAGCACAACCTGGCGGTGGTGGCGCACGCGGACCGGGTGATCGACCTGGGTCCGGGC
GGCGGACGGGACGGCGGCCGGGTGCTGTTCGAGGGCACGCCGGCCGAGCTGCTGAACGCGCCGGGGTCGTTCACCGGGGA
GCATCTGCGGCGGGCCGTGGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(471-673)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

38.547

94.96

0.366
  uvrA Streptococcus pneumoniae TIGR4

38.547

94.96

0.366
  uvrA Streptococcus pneumoniae D39

38.547

94.96

0.366