Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | AB5J58_RS42375 | Genome accession | NZ_CP163431 |
| Coordinates | 9360005..9362476 (+) | Length | 823 a.a. |
| NCBI ID | WP_369191368.1 | Uniprot ID | - |
| Organism | Streptomyces sp. R08 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 9355005..9367476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB5J58_RS42360 (AB5J58_42360) | - | 9355296..9356228 (+) | 933 | WP_369191365.1 | lysophospholipid acyltransferase family protein | - |
| AB5J58_RS42365 (AB5J58_42365) | - | 9356346..9357476 (+) | 1131 | WP_369191366.1 | alanine--tRNA ligase-related protein | - |
| AB5J58_RS42370 (AB5J58_42370) | uvrA | 9357543..9359873 (-) | 2331 | WP_369191367.1 | ATP-binding cassette domain-containing protein | Machinery gene |
| AB5J58_RS42375 (AB5J58_42375) | clpC | 9360005..9362476 (+) | 2472 | WP_369191368.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| AB5J58_RS42380 (AB5J58_42380) | - | 9362511..9363533 (+) | 1023 | WP_369191369.1 | alcohol dehydrogenase | - |
| AB5J58_RS42385 (AB5J58_42385) | - | 9363523..9364518 (-) | 996 | WP_369191370.1 | LLM class flavin-dependent oxidoreductase | - |
| AB5J58_RS42390 (AB5J58_42390) | rpmF | 9364561..9364731 (-) | 171 | WP_369191371.1 | 50S ribosomal protein L32 | - |
| AB5J58_RS42395 (AB5J58_42395) | - | 9364854..9365255 (-) | 402 | WP_369191372.1 | (2Fe-2S) ferredoxin domain-containing protein | - |
| AB5J58_RS42400 (AB5J58_42400) | - | 9365328..9365819 (+) | 492 | WP_369191373.1 | HAD family acid phosphatase | - |
| AB5J58_RS42405 (AB5J58_42405) | - | 9365881..9366096 (-) | 216 | WP_266777659.1 | dodecin | - |
| AB5J58_RS42410 (AB5J58_42410) | egtD | 9366190..9367152 (-) | 963 | WP_369191374.1 | L-histidine N(alpha)-methyltransferase | - |
Sequence
Protein
Download Length: 823 a.a. Molecular weight: 90073.21 Da Isoelectric Point: 4.8023
>NTDB_id=924975 AB5J58_RS42375 WP_369191368.1 9360005..9362476(+) (clpC) [Streptomyces sp. R08]
MSTPGFGFGRSPFEEFDELMSRYFGGSGPAAPSRRAQRVDIGSLLSERARELVAQARDIAAVEGSEQLDARHLLAAATEQ
ESTRRLLAEAGADPDRIRERLSAGAEGGPKTDPTTLTPAAKRALLDAYQLSRAEDSSYIGPEHLLRALAANPESAAGQAL
AGSGWEGDRMPTGAEPERKKPSSTPTVDEYGRDLTEDARAGRLDPVIGRDEEVEQTIEVLSRRSKNNPVLIGDPGVGKTA
VVEGIAQRIIAGDVPKTLAGKRLVSLDLAGMVAGTKYRGEFEERLKKLLDEVSEHSDELVLFLDELHTVVGAGGGGDGAM
DAGNMLKPALARGQLHLIGATTVDEYRRYIEKDSALERRFAPILIGEPTVDDTIEILRGLRDRYEAHHQVSITDEAVVAA
AELSDRYITARFLPDKAIDLMDQAAARVRLRAKTPLSDTRDVEDRLAALNREKDQAVADEEYERAKEIRDRIKDTEAELK
AGGSAEEQAPKVTAEDIAEVVSRTTGIPVSQLTEEERARLMKLEEHLHERVVGQDEAITAVARAVRRARAGMSDPNRPIG
SFLFLGPTGVGKTELARALAAALFGDEGRMIRLDMSEFQERHTVSRLVGAPPGYVGHEEAGQLTEAVRRQPYAVLLLDEV
EKAHPDVFNTLLQLLDDGRLTDSQGRTVDFKNTVVIMTSNIGADRILAAGVEDYAKVRETVMPVLNQHFRPEFLNRIDEI
IVFRGLERTQLREIVDLLLDHTRRRLHAQDVTLEVTDAAADLLANLGYQPDFGARPLRRTIQREVDDRLADMLLAGELNA
GDQAQVDAADGTIQIRARQAAEH
MSTPGFGFGRSPFEEFDELMSRYFGGSGPAAPSRRAQRVDIGSLLSERARELVAQARDIAAVEGSEQLDARHLLAAATEQ
ESTRRLLAEAGADPDRIRERLSAGAEGGPKTDPTTLTPAAKRALLDAYQLSRAEDSSYIGPEHLLRALAANPESAAGQAL
AGSGWEGDRMPTGAEPERKKPSSTPTVDEYGRDLTEDARAGRLDPVIGRDEEVEQTIEVLSRRSKNNPVLIGDPGVGKTA
VVEGIAQRIIAGDVPKTLAGKRLVSLDLAGMVAGTKYRGEFEERLKKLLDEVSEHSDELVLFLDELHTVVGAGGGGDGAM
DAGNMLKPALARGQLHLIGATTVDEYRRYIEKDSALERRFAPILIGEPTVDDTIEILRGLRDRYEAHHQVSITDEAVVAA
AELSDRYITARFLPDKAIDLMDQAAARVRLRAKTPLSDTRDVEDRLAALNREKDQAVADEEYERAKEIRDRIKDTEAELK
AGGSAEEQAPKVTAEDIAEVVSRTTGIPVSQLTEEERARLMKLEEHLHERVVGQDEAITAVARAVRRARAGMSDPNRPIG
SFLFLGPTGVGKTELARALAAALFGDEGRMIRLDMSEFQERHTVSRLVGAPPGYVGHEEAGQLTEAVRRQPYAVLLLDEV
EKAHPDVFNTLLQLLDDGRLTDSQGRTVDFKNTVVIMTSNIGADRILAAGVEDYAKVRETVMPVLNQHFRPEFLNRIDEI
IVFRGLERTQLREIVDLLLDHTRRRLHAQDVTLEVTDAAADLLANLGYQPDFGARPLRRTIQREVDDRLADMLLAGELNA
GDQAQVDAADGTIQIRARQAAEH
Nucleotide
Download Length: 2472 bp
>NTDB_id=924975 AB5J58_RS42375 WP_369191368.1 9360005..9362476(+) (clpC) [Streptomyces sp. R08]
ATGAGCACTCCCGGATTCGGTTTCGGACGCAGCCCCTTCGAGGAATTCGACGAGCTGATGTCCCGGTATTTCGGCGGTTC
GGGGCCGGCGGCACCGTCGCGCAGGGCCCAGCGCGTCGACATCGGCAGCCTGCTCTCGGAGCGGGCCCGTGAGCTGGTGG
CGCAGGCGCGGGACATCGCGGCCGTCGAGGGCAGCGAGCAGCTCGACGCCCGGCATCTGCTGGCCGCCGCCACCGAGCAG
GAGTCGACCCGGCGCCTGCTCGCCGAGGCGGGCGCGGACCCCGACCGGATCCGCGAGCGGCTCTCCGCCGGTGCCGAGGG
CGGCCCGAAGACCGACCCCACCACGCTCACCCCGGCCGCCAAGCGTGCCCTCCTCGACGCGTACCAGCTCTCCCGTGCCG
AGGACTCCTCGTACATCGGCCCCGAGCATCTGCTGCGGGCCCTCGCCGCGAACCCCGAGTCCGCCGCGGGACAGGCCCTC
GCGGGCAGCGGCTGGGAGGGCGACCGGATGCCCACCGGTGCCGAACCCGAGCGGAAGAAGCCCAGCAGCACGCCGACCGT
CGACGAGTACGGCCGCGACCTCACCGAGGACGCGCGGGCCGGGCGGCTCGACCCGGTGATCGGCCGGGACGAGGAGGTCG
AGCAGACCATCGAGGTGCTGTCCCGGCGCAGCAAGAACAACCCCGTCCTCATCGGCGACCCCGGTGTCGGCAAGACCGCC
GTCGTCGAGGGCATCGCCCAGCGGATCATCGCCGGTGACGTGCCGAAGACCCTCGCGGGCAAGCGGCTCGTCTCGCTGGA
CCTGGCCGGGATGGTCGCGGGCACCAAGTACCGGGGCGAGTTCGAGGAACGGCTGAAGAAACTCCTCGACGAGGTGAGCG
AGCACAGCGACGAACTGGTGCTGTTCCTCGACGAGTTGCACACCGTCGTGGGCGCGGGCGGCGGCGGTGACGGCGCCATG
GACGCGGGCAACATGCTCAAACCCGCCCTGGCGCGCGGCCAGTTGCACCTCATCGGCGCCACCACCGTCGACGAGTACCG
CAGGTACATCGAGAAGGACTCCGCGCTGGAGCGCCGCTTCGCGCCCATCCTGATCGGCGAGCCGACCGTCGACGACACCA
TCGAGATCCTGCGCGGCCTGCGTGACCGCTACGAGGCCCACCACCAGGTCAGCATCACCGACGAGGCGGTCGTCGCGGCG
GCCGAACTCTCCGACCGGTACATCACCGCCCGTTTCCTGCCCGACAAGGCCATCGACCTGATGGACCAGGCCGCGGCCCG
GGTACGGCTGCGGGCCAAGACCCCGCTCTCCGACACCCGTGACGTCGAGGACCGGCTCGCCGCCCTGAACCGCGAGAAGG
ACCAGGCCGTCGCCGACGAGGAGTACGAGCGGGCCAAGGAGATCCGCGACCGGATCAAGGACACCGAGGCCGAGCTGAAG
GCGGGCGGCTCCGCCGAGGAGCAGGCGCCCAAGGTCACCGCCGAGGACATCGCCGAGGTCGTCTCCCGCACCACCGGCAT
CCCGGTCTCCCAGCTCACCGAGGAGGAACGCGCCCGGCTGATGAAGCTGGAGGAGCACCTCCACGAGCGGGTCGTCGGCC
AGGACGAGGCCATCACCGCCGTCGCCCGTGCCGTACGGCGGGCCCGGGCCGGCATGAGCGACCCGAACCGGCCCATCGGC
AGCTTCCTCTTCCTCGGCCCCACCGGCGTCGGCAAGACCGAACTGGCCCGCGCGCTCGCCGCCGCCCTCTTCGGCGACGA
GGGCCGCATGATCCGCCTCGACATGAGCGAGTTCCAGGAGCGCCACACCGTCTCCCGCCTGGTCGGAGCGCCTCCCGGCT
ACGTCGGCCACGAGGAGGCCGGCCAGCTCACCGAGGCCGTCCGCAGGCAGCCGTACGCCGTGCTGCTGCTCGACGAGGTC
GAGAAGGCGCACCCCGACGTCTTCAACACGCTGCTCCAACTCCTCGACGACGGACGGCTCACCGACTCGCAGGGCCGCAC
CGTCGACTTCAAGAACACCGTTGTGATCATGACGTCGAACATCGGCGCCGACCGCATCCTCGCGGCGGGCGTCGAGGACT
ACGCCAAGGTCCGCGAGACGGTGATGCCGGTCCTGAACCAGCACTTCCGCCCCGAGTTCCTCAACCGCATCGACGAGATC
ATCGTCTTCCGGGGCCTGGAGCGGACCCAACTGCGGGAGATCGTCGACCTGTTGCTGGACCACACCCGGCGCAGGCTGCA
CGCGCAAGACGTCACCCTGGAGGTCACCGACGCTGCGGCGGACCTTCTCGCCAACCTCGGCTACCAACCCGACTTCGGCG
CGCGGCCGTTGCGCCGCACCATCCAGCGCGAGGTCGACGACCGGCTCGCCGACATGCTGCTCGCCGGCGAGCTGAACGCG
GGCGACCAGGCACAGGTCGACGCGGCCGACGGCACGATCCAGATCAGGGCACGCCAGGCGGCCGAGCACTAG
ATGAGCACTCCCGGATTCGGTTTCGGACGCAGCCCCTTCGAGGAATTCGACGAGCTGATGTCCCGGTATTTCGGCGGTTC
GGGGCCGGCGGCACCGTCGCGCAGGGCCCAGCGCGTCGACATCGGCAGCCTGCTCTCGGAGCGGGCCCGTGAGCTGGTGG
CGCAGGCGCGGGACATCGCGGCCGTCGAGGGCAGCGAGCAGCTCGACGCCCGGCATCTGCTGGCCGCCGCCACCGAGCAG
GAGTCGACCCGGCGCCTGCTCGCCGAGGCGGGCGCGGACCCCGACCGGATCCGCGAGCGGCTCTCCGCCGGTGCCGAGGG
CGGCCCGAAGACCGACCCCACCACGCTCACCCCGGCCGCCAAGCGTGCCCTCCTCGACGCGTACCAGCTCTCCCGTGCCG
AGGACTCCTCGTACATCGGCCCCGAGCATCTGCTGCGGGCCCTCGCCGCGAACCCCGAGTCCGCCGCGGGACAGGCCCTC
GCGGGCAGCGGCTGGGAGGGCGACCGGATGCCCACCGGTGCCGAACCCGAGCGGAAGAAGCCCAGCAGCACGCCGACCGT
CGACGAGTACGGCCGCGACCTCACCGAGGACGCGCGGGCCGGGCGGCTCGACCCGGTGATCGGCCGGGACGAGGAGGTCG
AGCAGACCATCGAGGTGCTGTCCCGGCGCAGCAAGAACAACCCCGTCCTCATCGGCGACCCCGGTGTCGGCAAGACCGCC
GTCGTCGAGGGCATCGCCCAGCGGATCATCGCCGGTGACGTGCCGAAGACCCTCGCGGGCAAGCGGCTCGTCTCGCTGGA
CCTGGCCGGGATGGTCGCGGGCACCAAGTACCGGGGCGAGTTCGAGGAACGGCTGAAGAAACTCCTCGACGAGGTGAGCG
AGCACAGCGACGAACTGGTGCTGTTCCTCGACGAGTTGCACACCGTCGTGGGCGCGGGCGGCGGCGGTGACGGCGCCATG
GACGCGGGCAACATGCTCAAACCCGCCCTGGCGCGCGGCCAGTTGCACCTCATCGGCGCCACCACCGTCGACGAGTACCG
CAGGTACATCGAGAAGGACTCCGCGCTGGAGCGCCGCTTCGCGCCCATCCTGATCGGCGAGCCGACCGTCGACGACACCA
TCGAGATCCTGCGCGGCCTGCGTGACCGCTACGAGGCCCACCACCAGGTCAGCATCACCGACGAGGCGGTCGTCGCGGCG
GCCGAACTCTCCGACCGGTACATCACCGCCCGTTTCCTGCCCGACAAGGCCATCGACCTGATGGACCAGGCCGCGGCCCG
GGTACGGCTGCGGGCCAAGACCCCGCTCTCCGACACCCGTGACGTCGAGGACCGGCTCGCCGCCCTGAACCGCGAGAAGG
ACCAGGCCGTCGCCGACGAGGAGTACGAGCGGGCCAAGGAGATCCGCGACCGGATCAAGGACACCGAGGCCGAGCTGAAG
GCGGGCGGCTCCGCCGAGGAGCAGGCGCCCAAGGTCACCGCCGAGGACATCGCCGAGGTCGTCTCCCGCACCACCGGCAT
CCCGGTCTCCCAGCTCACCGAGGAGGAACGCGCCCGGCTGATGAAGCTGGAGGAGCACCTCCACGAGCGGGTCGTCGGCC
AGGACGAGGCCATCACCGCCGTCGCCCGTGCCGTACGGCGGGCCCGGGCCGGCATGAGCGACCCGAACCGGCCCATCGGC
AGCTTCCTCTTCCTCGGCCCCACCGGCGTCGGCAAGACCGAACTGGCCCGCGCGCTCGCCGCCGCCCTCTTCGGCGACGA
GGGCCGCATGATCCGCCTCGACATGAGCGAGTTCCAGGAGCGCCACACCGTCTCCCGCCTGGTCGGAGCGCCTCCCGGCT
ACGTCGGCCACGAGGAGGCCGGCCAGCTCACCGAGGCCGTCCGCAGGCAGCCGTACGCCGTGCTGCTGCTCGACGAGGTC
GAGAAGGCGCACCCCGACGTCTTCAACACGCTGCTCCAACTCCTCGACGACGGACGGCTCACCGACTCGCAGGGCCGCAC
CGTCGACTTCAAGAACACCGTTGTGATCATGACGTCGAACATCGGCGCCGACCGCATCCTCGCGGCGGGCGTCGAGGACT
ACGCCAAGGTCCGCGAGACGGTGATGCCGGTCCTGAACCAGCACTTCCGCCCCGAGTTCCTCAACCGCATCGACGAGATC
ATCGTCTTCCGGGGCCTGGAGCGGACCCAACTGCGGGAGATCGTCGACCTGTTGCTGGACCACACCCGGCGCAGGCTGCA
CGCGCAAGACGTCACCCTGGAGGTCACCGACGCTGCGGCGGACCTTCTCGCCAACCTCGGCTACCAACCCGACTTCGGCG
CGCGGCCGTTGCGCCGCACCATCCAGCGCGAGGTCGACGACCGGCTCGCCGACATGCTGCTCGCCGGCGAGCTGAACGCG
GGCGACCAGGCACAGGTCGACGCGGCCGACGGCACGATCCAGATCAGGGCACGCCAGGCGGCCGAGCACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.622 |
97.691 |
0.495 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.369 |
95.383 |
0.442 |
| clpC | Streptococcus pneumoniae TIGR4 |
42.805 |
100 |
0.43 |
| clpC | Streptococcus mutans UA159 |
42.002 |
99.514 |
0.418 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.927 |
83.232 |
0.416 |
| clpE | Streptococcus mutans UA159 |
51.603 |
79.587 |
0.411 |
| clpE | Streptococcus pneumoniae D39 |
50.938 |
77.764 |
0.396 |
| clpE | Streptococcus pneumoniae R6 |
50.938 |
77.764 |
0.396 |
| clpE | Streptococcus pneumoniae TIGR4 |
50.938 |
77.764 |
0.396 |
| clpE | Streptococcus pneumoniae Rx1 |
50.938 |
77.764 |
0.396 |
| clpC | Streptococcus pneumoniae D39 |
48.995 |
78.615 |
0.385 |
| clpC | Streptococcus pneumoniae Rx1 |
48.995 |
78.615 |
0.385 |
| clpC | Streptococcus thermophilus LMD-9 |
49.373 |
77.521 |
0.383 |
| clpC | Streptococcus thermophilus LMG 18311 |
48.906 |
77.764 |
0.38 |