Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB5J58_RS42370 Genome accession   NZ_CP163431
Coordinates   9357543..9359873 (-) Length   776 a.a.
NCBI ID   WP_369191367.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9352543..9364873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS42350 (AB5J58_42350) - 9353463..9354212 (+) 750 WP_328826923.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  AB5J58_RS42355 (AB5J58_42355) - 9354523..9355296 (+) 774 WP_328826922.1 GNAT family N-acyltransferase -
  AB5J58_RS42360 (AB5J58_42360) - 9355296..9356228 (+) 933 WP_369191365.1 lysophospholipid acyltransferase family protein -
  AB5J58_RS42365 (AB5J58_42365) - 9356346..9357476 (+) 1131 WP_369191366.1 alanine--tRNA ligase-related protein -
  AB5J58_RS42370 (AB5J58_42370) uvrA 9357543..9359873 (-) 2331 WP_369191367.1 ATP-binding cassette domain-containing protein Machinery gene
  AB5J58_RS42375 (AB5J58_42375) clpC 9360005..9362476 (+) 2472 WP_369191368.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AB5J58_RS42380 (AB5J58_42380) - 9362511..9363533 (+) 1023 WP_369191369.1 alcohol dehydrogenase -
  AB5J58_RS42385 (AB5J58_42385) - 9363523..9364518 (-) 996 WP_369191370.1 LLM class flavin-dependent oxidoreductase -
  AB5J58_RS42390 (AB5J58_42390) rpmF 9364561..9364731 (-) 171 WP_369191371.1 50S ribosomal protein L32 -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 83159.21 Da        Isoelectric Point: 6.7550

>NTDB_id=924974 AB5J58_RS42370 WP_369191367.1 9357543..9359873(-) (uvrA) [Streptomyces sp. R08]
MDNPRDPYVRVRGAREHNLQGVDVDIPRDVLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPKVGG
ITGLPPAVSLQQRRSTPTSRSSVGTVTNLSNSLRMLFSRAGDYPPGAERLDSDAFSPNTAAGACPECHGLGRVHRTTEES
LVPDPSLSIREGAIAAWPGAWQGKNLRDILDTLGHDVDVPWRELPADERKWILFTDEQPVVTVHPVRDADRIQRPYQGTY
MSAHRYVMKTFADTKSPTLRAKAERFLTSTPCPLCKGRRLRAESLAVTIAGRTIADLAALPLAELAGTLTGTSEAARVLT
EDLTSRIAPILELGLGYLSLDRATPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTKALLTVLDRLKATGNS
VFVVEHHLDVMRGADWLVDVGPQAGEHGGRVLYSGPVEGLAAVEESATARFLFDRSPTPPREVRSPRGELKVGPVTRHNL
RDVTAEFPLGVFTAVTGVSGSGKSTLIGEITEELAGVGRLVSVDQKPIGRTPRSNLATYTGLFDVVRKVFASTDEARQRG
YGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYNPDTLQVTYRGRNIADVLDLTVENAAEFFADTPA
VARSLTTLLDVGLGYLHLGQPATELSGGEAQRIKLATELQRAHRTHTLYLLDEPTTGLHPADVELLLHQLHGLVDAGHTV
IVVEHDMAVVAGADWVIDMGPGGGEKGGRVVAAGTPTAVAGTKGSTTAPYLKNALE

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=924974 AB5J58_RS42370 WP_369191367.1 9357543..9359873(-) (uvrA) [Streptomyces sp. R08]
ATGGACAACCCCCGCGATCCCTACGTCCGCGTCCGCGGCGCCCGCGAGCACAACCTCCAGGGCGTCGACGTCGACATCCC
GCGGGACGTGTTGGCCGTGTTCACAGGCGTCTCCGGCTCCGGAAAGTCGTCCCTGGCCTTCGGCACGATCTACGCGGAGG
CCCAGCGCCGCTACTTCGAGTCGGTCGCGCCGTACGCCCGCCGTCTGATCCACCAGGTGGGCGCGCCGAAGGTCGGCGGG
ATCACCGGTCTCCCTCCGGCGGTCTCGCTCCAGCAGCGCCGCTCGACCCCCACCTCCCGTTCCTCGGTGGGCACGGTCAC
CAACCTCTCGAACTCGCTGCGGATGCTCTTCTCCCGTGCGGGCGACTACCCGCCCGGCGCGGAACGCCTGGACTCGGACG
CCTTCTCCCCGAACACGGCGGCGGGCGCGTGCCCGGAGTGCCACGGCCTCGGCCGGGTCCACCGCACCACCGAGGAGTCC
CTCGTCCCCGACCCCTCCCTCTCCATCCGCGAGGGCGCGATCGCCGCGTGGCCGGGCGCCTGGCAGGGCAAGAACCTCCG
GGACATCCTCGACACCCTCGGCCACGACGTGGACGTGCCGTGGCGCGAACTCCCCGCCGACGAGCGGAAGTGGATCCTCT
TCACGGACGAGCAGCCGGTGGTGACCGTCCACCCCGTCCGGGACGCGGACCGCATCCAACGCCCGTACCAGGGCACGTAC
ATGAGCGCCCACCGCTACGTCATGAAGACCTTCGCCGACACGAAGAGCCCGACCCTGCGGGCGAAAGCGGAACGCTTCCT
GACCAGCACCCCCTGCCCCCTGTGCAAAGGCCGCAGACTCCGCGCCGAGTCCCTGGCGGTGACCATCGCGGGCCGCACGA
TCGCCGACCTGGCCGCCCTCCCGCTGGCCGAGCTGGCGGGCACCCTGACCGGCACATCGGAGGCGGCCCGCGTCCTCACC
GAGGACCTCACCTCGCGCATCGCCCCCATCCTCGAACTGGGCCTCGGCTACCTCAGCCTGGACCGGGCGACCCCCACCCT
CTCGGCAGGCGAACTCCAACGCCTGCGCCTGGCAACCCAGTTGAGGTCCGGCCTCTTCGGAGTCGTCTACGTCCTGGACG
AACCCTCCGCAGGCCTGCACCCGGCGGACACGAAGGCCCTCCTGACGGTCCTGGACCGCCTGAAGGCCACCGGCAACTCG
GTGTTCGTGGTGGAGCACCACCTGGACGTGATGCGCGGCGCCGACTGGCTGGTGGACGTGGGCCCGCAGGCGGGTGAGCA
CGGCGGACGGGTGCTGTACAGCGGCCCGGTGGAAGGCCTGGCGGCGGTGGAGGAATCGGCGACGGCCCGCTTCCTCTTCG
ACCGCTCCCCCACCCCGCCGCGCGAAGTCCGTTCGCCGCGCGGCGAGTTGAAGGTGGGCCCGGTCACGCGGCACAACCTG
CGCGACGTGACGGCCGAGTTCCCCCTCGGCGTGTTCACGGCGGTCACCGGCGTCTCGGGCTCCGGCAAATCCACGCTGAT
CGGCGAGATCACCGAGGAACTGGCAGGCGTAGGCCGCCTGGTGTCGGTGGACCAGAAGCCGATCGGCCGCACCCCCCGCT
CGAACCTGGCGACGTACACCGGCCTCTTCGACGTCGTCCGCAAGGTCTTCGCGTCGACGGACGAGGCACGCCAACGGGGT
TACGGCGTAGGGCGGTTCTCCTTCAACGTGGCGGGCGGCCGCTGCGAGACCTGCCAGGGCGAGGGCTTCGTCAGCGTGGA
ACTGCTCTTCCTGCCCAGCACCTACGCCCCCTGCCCGGACTGCGGCGGGGCCCGCTACAACCCCGACACGCTCCAAGTGA
CGTACCGGGGACGGAACATCGCGGACGTCCTCGACCTGACGGTGGAGAACGCGGCGGAGTTCTTCGCGGACACTCCAGCC
GTAGCCCGCAGCCTGACCACACTCCTGGACGTGGGCCTCGGCTACCTCCATCTCGGCCAGCCCGCCACCGAGTTGTCCGG
CGGCGAGGCCCAACGCATCAAGCTGGCCACCGAGTTGCAGCGCGCCCACCGCACCCACACCCTCTACCTCCTCGACGAAC
CCACCACCGGCCTCCACCCCGCCGACGTGGAACTCCTTCTCCACCAACTCCACGGCCTGGTCGACGCCGGCCACACCGTG
ATCGTCGTCGAACACGACATGGCAGTGGTGGCAGGCGCGGACTGGGTGATCGACATGGGCCCGGGCGGAGGAGAGAAGGG
GGGCCGCGTCGTGGCGGCAGGCACGCCGACAGCGGTGGCGGGGACCAAGGGAAGCACCACGGCCCCCTACCTGAAAAACG
CCCTGGAGTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)

ABC transporter (ABC_tran)

(480-695)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.669

87.887

0.375
  uvrA Streptococcus pneumoniae TIGR4

42.669

87.887

0.375
  uvrA Streptococcus pneumoniae D39

42.669

87.887

0.375