Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   VKP35_RS07290 Genome accession   NZ_CP142349
Coordinates   1410254..1410964 (-) Length   236 a.a.
NCBI ID   WP_002985645.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 11RS100     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405254..1415964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP35_RS07275 (VKP35_07275) rnc 1406961..1407653 (-) 693 WP_111713163.1 ribonuclease III -
  VKP35_RS07280 (VKP35_07280) vicX 1408096..1408905 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  VKP35_RS07285 (VKP35_07285) vicK 1408909..1410261 (-) 1353 WP_002985643.1 cell wall metabolism sensor histidine kinase VicK Regulator
  VKP35_RS07290 (VKP35_07290) vicR 1410254..1410964 (-) 711 WP_002985645.1 response regulator YycF Regulator
  VKP35_RS07295 (VKP35_07295) - 1411126..1412160 (-) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  VKP35_RS07300 (VKP35_07300) - 1412216..1413463 (-) 1248 WP_002985649.1 AMP-binding protein -
  VKP35_RS07305 (VKP35_07305) - 1413420..1414568 (-) 1149 WP_002985651.1 acetyl-CoA C-acyltransferase -
  VKP35_RS07310 (VKP35_07310) - 1414537..1415106 (-) 570 WP_032467292.1 hypothetical protein -
  VKP35_RS07315 (VKP35_07315) - 1415241..1415954 (-) 714 WP_309543661.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27083.99 Da        Isoelectric Point: 4.9038

>NTDB_id=924954 VKP35_RS07290 WP_002985645.1 1410254..1410964(-) (vicR) [Streptococcus pyogenes strain 11RS100]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=924954 VKP35_RS07290 WP_002985645.1 1410254..1410964(-) (vicR) [Streptococcus pyogenes strain 11RS100]
ATGAAAAAAATACTTATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAATTTGACAAAAGAAGGTTATGA
CATTGTTACAGCTTTTGATGGACGCGAAGCGGTAACAATTTTTGAAGAAGAAAAGCCAGATTTAATTATTCTTGATTTGA
TGCTCCCTGAGTTGGACGGTCTTGAAGTAGCCAAGGAAATTCGTAAAACCAGTCATGTCCCGATTATTATGTTGTCGGCT
AAAGATAGTGAGTTTGACAAGGTTATTGGACTTGAAATTGGGGCTGATGATTACGTGACCAAGCCTTTTTCTAATCGGGA
ATTGCTGGCGCGTGTCAAGGCTCATCTGCGTCGTACCGAAACTATTGAAACGGCTGTTGCAGAAGAAAATGCTTCTTCAG
GTACACAGGAACTAACCATTGGTAATTTACAGATTTTACCAGATGCGTTTGTTGCTAAAAAACATGGTCAAGAGGTAGAG
TTGACCCATCGTGAATTTGAACTATTGCATCATCTAGCTAACCATATGGGTCAGGTGATGACACGAGAACACTTATTGGA
AATTGTTTGGGGATATGATTATTTTGGCGATGTGCGCACGGTTGATGTGACTGTTCGTCGTCTCCGTGAAAAAATTGAAG
ACACACCAAGTCGTCCTGAGTATATTTTAACAAGACGTGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.06

99.153

0.784
  covR Streptococcus salivarius strain HSISS4

44.828

98.305

0.441
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

36.91

98.729

0.364