Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PanNE5_RS04575 Genome accession   NZ_AP025517
Coordinates   981620..983158 (+) Length   512 a.a.
NCBI ID   WP_261939317.1    Uniprot ID   -
Organism   Pandoraea sp. NE5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 976620..988158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PanNE5_RS04555 (PanNE5_09140) amt 977961..979430 (-) 1470 WP_246181717.1 ammonium transporter -
  PanNE5_RS04560 (PanNE5_09150) - 979517..979855 (-) 339 WP_010804740.1 P-II family nitrogen regulator -
  PanNE5_RS04565 (PanNE5_09160) - 979869..980690 (-) 822 WP_261939316.1 TorF family putative porin -
  PanNE5_RS04570 (PanNE5_09170) - 981084..981332 (+) 249 WP_017235617.1 accessory factor UbiK family protein -
  PanNE5_RS04575 (PanNE5_09180) comM 981620..983158 (+) 1539 WP_261939317.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PanNE5_RS04580 (PanNE5_09190) - 983181..983720 (-) 540 WP_261939318.1 hypothetical protein -
  PanNE5_RS04585 (PanNE5_09200) - 983820..984566 (+) 747 WP_261939319.1 hypothetical protein -
  PanNE5_RS04590 (PanNE5_09210) - 984721..985215 (+) 495 WP_017235612.1 TlpA disulfide reductase family protein -
  PanNE5_RS04595 (PanNE5_09220) - 985333..986688 (-) 1356 WP_017235611.1 sigma-54-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53860.49 Da        Isoelectric Point: 7.9784

>NTDB_id=92447 PanNE5_RS04575 WP_261939317.1 981620..983158(+) (comM) [Pandoraea sp. NE5]
MSVAVVSSRAITGMAARAVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPDIGLRSHEFAGELSLTGELRPVRGALAMASAMLAEPSARALVLPAASAQEAALVEGATVYGAR
TLLDVCAHLAEPDVATPLPRAVVPLALAASADSGVAQASDLPDLGDIKGQEHAKRALEVAAAGGHHILFYGPPGTGKSML
ATRLAGLLPALSKAQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASAAALVGGGSAPRPGEISLAHRGVLFLDELPEF
QRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRNCRCTSEAVARYRNRLSGPLLDRIDLHVE
VPALSAETFAAPASGERSEVVATRVRQARERQLSRQGQLNCGLSSRALEAQCALQPNAQDVLHRAVTQHHWSARTYHRVL
RVARTVADLAGIGDIDAHHVAEAVQYREAPSS

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=92447 PanNE5_RS04575 WP_261939317.1 981620..983158(+) (comM) [Pandoraea sp. NE5]
ATGTCAGTGGCAGTTGTCAGCAGCCGTGCGATCACGGGGATGGCGGCCCGCGCGGTCACCGTCGAAGTGCACTTGGCGAA
CGGGCTGCCCGGCCTGTCGCTGGTCGGCCTGCCCGATACCGAGGTCAAGGAAAGCCGGGAGCGCGTGCGCTCTGCGTTGC
AGAACAGCCGGTTCGAATTTCCCGCCCGGCGCATCACGGTCAATCTGGCGCCGGCCGATTTACCCAAAGCGTCTGGCTGC
TTCGATCTGCCGATTGCGCTTGGCATCCTCGCGGCCAGCGGTCAGCTCCCCGACATCGGATTGCGCTCGCACGAGTTTGC
GGGAGAGTTGTCGCTCACCGGCGAGTTGCGTCCGGTTCGCGGGGCATTGGCGATGGCGAGCGCCATGCTGGCCGAACCGT
CGGCGCGTGCGCTCGTGCTGCCCGCGGCAAGCGCGCAGGAAGCCGCATTGGTGGAGGGCGCCACGGTCTATGGCGCGCGC
ACCTTGCTCGATGTCTGCGCGCATCTCGCCGAGCCCGACGTGGCGACGCCGCTGCCGCGCGCCGTTGTCCCACTGGCGCT
GGCGGCGTCGGCCGACAGCGGCGTCGCGCAAGCAAGCGACCTCCCCGACCTGGGCGATATCAAGGGACAAGAGCACGCCA
AGCGCGCCCTGGAAGTTGCGGCGGCAGGCGGACATCACATCTTGTTCTACGGCCCACCGGGTACCGGCAAGTCGATGCTG
GCGACGCGGCTCGCGGGACTGCTCCCGGCGCTGAGCAAGGCGCAGGCCGTGGAGGCCGCCACGCTGGCCAGCCTGAGCGC
ACAGGGATTCGATATGCGCCACTGGGGCCGGCGACCGTTTCGCGCGCCGCATCATACGGCGTCGGCCGCGGCGCTGGTGG
GCGGAGGTAGCGCGCCGCGGCCCGGTGAAATCAGCCTGGCCCATCGCGGGGTGCTCTTTCTCGACGAACTCCCTGAATTT
CAGCGCCGCGTGCTCGAAGTCCTGCGCGAACCGCTGGAGTTGGGCCATGTCACGATCTCCCGCGCGGGCGGACACGCCAC
GTTCCCCGCCGCGTTTCAACTCGTGGCCGCGATGAACCCGTGCCCGTGCGGCGACCTGGGACATCCGTCGCGCAATTGCC
GCTGTACGAGCGAGGCCGTGGCGCGATATCGCAATCGTCTCTCGGGCCCGCTGCTCGATCGCATCGACCTGCACGTCGAA
GTGCCGGCGCTGAGCGCCGAGACATTCGCCGCGCCGGCCAGCGGCGAGCGCAGCGAAGTCGTGGCGACACGCGTCAGGCA
GGCGCGGGAGCGCCAGCTATCTCGCCAGGGCCAATTGAACTGCGGCCTGTCGAGCCGTGCGCTGGAGGCGCAATGCGCCC
TGCAGCCGAACGCGCAGGACGTTCTGCACCGCGCAGTGACGCAACACCATTGGTCGGCACGCACCTATCATCGCGTGCTG
CGCGTGGCGCGCACGGTAGCCGATCTCGCAGGCATTGGCGATATCGATGCCCATCACGTCGCAGAGGCCGTGCAATACCG
CGAAGCCCCGTCATCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.346

99.219

0.529
  comM Vibrio campbellii strain DS40M4

51.772

99.219

0.514
  comM Haemophilus influenzae Rd KW20

50.688

99.414

0.504
  comM Glaesserella parasuis strain SC1401

50.098

99.805

0.5
  comM Legionella pneumophila str. Paris

49.315

99.805

0.492
  comM Legionella pneumophila strain ERS1305867

49.315

99.805

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.444

100

0.445

Multiple sequence alignment