Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PanNE5_RS04045 Genome accession   NZ_AP025517
Coordinates   875249..875770 (-) Length   173 a.a.
NCBI ID   WP_017232617.1    Uniprot ID   A0AAW7MT86
Organism   Pandoraea sp. NE5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 870249..880770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PanNE5_RS04025 (PanNE5_08060) - 870793..871986 (-) 1194 WP_261939282.1 CaiB/BaiF CoA transferase family protein -
  PanNE5_RS04030 (PanNE5_08070) - 872065..872964 (-) 900 WP_261939283.1 HpcH/HpaI aldolase/citrate lyase family protein -
  PanNE5_RS04035 (PanNE5_08080) - 873076..873975 (+) 900 WP_261939284.1 LysR substrate-binding domain-containing protein -
  PanNE5_RS04040 (PanNE5_08090) - 874023..874883 (-) 861 WP_026131711.1 sulfurtransferase -
  PanNE5_RS04045 (PanNE5_08100) ssb 875249..875770 (-) 522 WP_017232617.1 single-stranded DNA-binding protein Machinery gene
  PanNE5_RS04050 (PanNE5_08110) - 875801..876964 (-) 1164 WP_017232618.1 MFS transporter -
  PanNE5_RS04055 (PanNE5_08120) uvrA 877430..880294 (+) 2865 WP_261939285.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17998.70 Da        Isoelectric Point: 5.3258

>NTDB_id=92445 PanNE5_RS04045 WP_017232617.1 875249..875770(-) (ssb) [Pandoraea sp. NE5]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKELTEWHRVSFFGRLAEIVNEYLKKGSAVYIEG
RIRTRKYQAQDGTERYSTEIVADQMQMLGGRSGGEGGGGGGGYSRGGGGSDEGGGGGYSRGGGGGGGGGGARQQAPAKQS
GGGFDDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=92445 PanNE5_RS04045 WP_017232617.1 875249..875770(-) (ssb) [Pandoraea sp. NE5]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGCAACCTTGGCGCCGATCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAGTCTGGCGAGTTCAAGGAGCTGACGGAATGGC
ACCGGGTGTCGTTCTTCGGCCGTCTCGCCGAGATCGTCAATGAGTACCTGAAGAAGGGCTCGGCGGTGTATATCGAAGGT
CGTATCCGCACGCGCAAGTACCAGGCGCAGGACGGCACCGAGCGTTACAGCACGGAAATCGTAGCGGACCAGATGCAGAT
GCTGGGCGGCCGCAGCGGTGGTGAAGGTGGCGGCGGCGGTGGCGGCTACTCGCGCGGCGGTGGTGGTAGCGACGAAGGCG
GCGGTGGCGGTTATTCGCGCGGCGGTGGTGGCGGTGGTGGTGGTGGCGGTGCCCGTCAGCAAGCACCGGCCAAGCAGTCG
GGCGGCGGTTTTGACGACATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.735

100

0.543
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.503
  ssb Neisseria meningitidis MC58

45.198

100

0.462
  ssb Neisseria gonorrhoeae MS11

45.198

100

0.462
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.405

Multiple sequence alignment