Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DPPLL_RS07975 Genome accession   NZ_AP025516
Coordinates   1712152..1713663 (-) Length   503 a.a.
NCBI ID   WP_284154269.1    Uniprot ID   -
Organism   Desulfofustis limnaeus strain PPLL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1707152..1718663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPPLL_RS07950 (DPPLL_15930) - 1707342..1708196 (+) 855 WP_284154264.1 alpha/beta fold hydrolase -
  DPPLL_RS07955 (DPPLL_15940) - 1708199..1708702 (+) 504 WP_284154265.1 dCMP deaminase family protein -
  DPPLL_RS07960 (DPPLL_15950) thiL 1708685..1709725 (-) 1041 WP_284154266.1 thiamine-phosphate kinase -
  DPPLL_RS07965 (DPPLL_15960) - 1710023..1710403 (-) 381 WP_284154267.1 hypothetical protein -
  DPPLL_RS07970 (DPPLL_15970) - 1710390..1712114 (-) 1725 WP_284154268.1 DUF3352 domain-containing protein -
  DPPLL_RS07975 (DPPLL_15980) comM 1712152..1713663 (-) 1512 WP_284154269.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DPPLL_RS07980 (DPPLL_15990) - 1713733..1714521 (-) 789 WP_284154270.1 methyltransferase -
  DPPLL_RS07985 (DPPLL_16000) - 1714493..1715860 (-) 1368 WP_284154271.1 DUF1015 domain-containing protein -
  DPPLL_RS07990 (DPPLL_16010) queD 1716162..1716545 (+) 384 WP_284154272.1 6-carboxytetrahydropterin synthase QueD -
  DPPLL_RS07995 (DPPLL_16020) - 1716538..1717200 (+) 663 WP_284154273.1 radical SAM protein -
  DPPLL_RS08000 (DPPLL_16030) tviB 1717238..1718515 (+) 1278 WP_284154274.1 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54654.84 Da        Isoelectric Point: 7.0965

>NTDB_id=92437 DPPLL_RS07975 WP_284154269.1 1712152..1713663(-) (comM) [Desulfofustis limnaeus strain PPLL]
MLAMIQSAALIGIDALPVTVEIDVTNGLPSFTTVGLPDGSVRESKDRVKSAIRNSGYPFPNRKITINLAPADLKKEGSAF
DLPIAIGLLVAADLVAPQAIEQLCAVGELSLDGSLRAVPGVLSIAMAAKAAGQKLVIPLANADEAALVDEVPIIAVQTLP
ELVEILTGLQEPPPITAPPDNQADDNYPVDFADIRGQDHVKRALEIAASGMHNVLMHGPPGSGKTMLARALPSILGDWTL
AERLETSRIYSVCGLKNGCPLIPQRPFRAPHHTISNAGLIGGGTTPRPGEVSLAHNGVLFLDEVPEFSRHVLEVLRQPLE
DGMVTIARAHGSISFPSRFMLVAAMNPCPCGYLGDERNQCRCTDQQIQRYQSRLSGPLLDRIDIRLEVAALDYRQLRARG
SAETSQAVRQRVNETRRIQQRRFSGQGIHCNGQMDARAIERFCAIDQESSRLLERSMTRLRLTARSCHRILKIARTIADM
EVSDRIGFPHLAEAIGYRHLHES

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=92437 DPPLL_RS07975 WP_284154269.1 1712152..1713663(-) (comM) [Desulfofustis limnaeus strain PPLL]
ATGTTGGCAATGATTCAGAGCGCTGCACTGATCGGTATCGATGCCCTGCCGGTCACGGTGGAAATCGATGTGACCAACGG
ACTGCCGTCGTTCACCACCGTGGGCCTGCCGGACGGATCGGTGCGGGAAAGCAAGGATCGGGTCAAGTCGGCCATCCGCA
ACTCCGGCTATCCGTTTCCCAATCGGAAGATAACCATCAATCTGGCCCCGGCCGATCTGAAAAAAGAAGGCTCAGCCTTT
GATCTGCCCATCGCCATCGGGCTGCTGGTGGCCGCCGACCTCGTCGCCCCACAGGCCATCGAGCAGCTGTGCGCTGTCGG
CGAATTGTCCCTGGACGGTTCCCTTCGTGCGGTTCCGGGTGTCTTGTCGATCGCCATGGCGGCCAAGGCCGCCGGTCAGA
AGCTGGTCATTCCGCTGGCCAACGCGGACGAGGCGGCCCTGGTCGACGAGGTGCCGATCATTGCCGTACAAACGTTGCCG
GAGCTGGTGGAAATCCTCACCGGCCTGCAGGAGCCACCCCCCATAACCGCACCGCCAGACAACCAGGCGGACGATAATTA
TCCGGTCGATTTCGCCGACATCCGGGGCCAGGATCATGTGAAGCGCGCCCTGGAAATCGCCGCCTCCGGCATGCATAACG
TGCTCATGCACGGGCCACCCGGCTCGGGGAAGACCATGCTGGCCCGGGCTCTGCCCTCCATCCTCGGCGATTGGACGTTG
GCGGAGCGGTTGGAAACCAGCCGGATCTACAGCGTCTGCGGCCTCAAGAACGGCTGCCCGCTCATCCCGCAACGACCTTT
TCGGGCACCGCACCACACCATCTCCAACGCCGGGCTCATCGGCGGTGGGACAACCCCACGCCCCGGGGAAGTTTCGCTTG
CCCACAACGGAGTACTCTTTCTTGACGAAGTTCCTGAATTCAGCCGCCACGTCCTGGAAGTGTTGCGACAACCGCTTGAA
GACGGGATGGTCACCATCGCCCGGGCCCATGGCAGTATCAGCTTTCCCTCCCGCTTCATGCTGGTGGCGGCCATGAACCC
CTGTCCCTGCGGCTATCTGGGCGACGAGCGGAATCAATGTCGCTGCACCGATCAGCAGATACAACGGTACCAGAGCCGCC
TCTCCGGCCCCCTGCTGGATCGGATCGATATCCGACTGGAGGTGGCTGCCCTTGATTATCGGCAACTGCGTGCCCGCGGT
TCGGCTGAGACATCACAGGCCGTCCGCCAGCGGGTCAATGAGACCAGACGAATCCAGCAACGCCGATTTTCCGGACAGGG
GATTCACTGCAACGGCCAGATGGACGCCAGGGCCATCGAACGTTTTTGCGCCATCGACCAGGAATCCTCGCGCCTGCTGG
AGCGAAGCATGACCAGGTTGCGATTGACGGCCCGCTCCTGCCATCGTATCCTGAAGATTGCCAGAACCATCGCCGACATG
GAGGTCAGTGATCGCATCGGCTTTCCGCATCTGGCCGAAGCGATCGGTTATCGTCACCTCCATGAGTCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.8

99.404

0.485
  comM Vibrio campbellii strain DS40M4

48.795

99.006

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.628

100

0.479
  comM Haemophilus influenzae Rd KW20

47.211

99.801

0.471
  comM Glaesserella parasuis strain SC1401

45.418

99.801

0.453
  comM Legionella pneumophila str. Paris

44.664

100

0.449
  comM Legionella pneumophila strain ERS1305867

44.664

100

0.449

Multiple sequence alignment