Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU50_RS14320 Genome accession   NZ_AP025514
Coordinates   3136411..3137934 (-) Length   507 a.a.
NCBI ID   WP_060468905.1    Uniprot ID   A0A109D6T1
Organism   Vibrio toranzoniae strain CECT 7225     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3131411..3142934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS14295 - 3131525..3131788 (+) 264 WP_009848104.1 YihD family protein -
  OCU50_RS20765 - 3131795..3131988 (-) 194 Protein_2694 hypothetical protein -
  OCU50_RS14300 ccoG 3132117..3133535 (+) 1419 WP_060468901.1 cytochrome c oxidase accessory protein CcoG -
  OCU50_RS14305 - 3133609..3134595 (+) 987 WP_060468902.1 serine/threonine protein kinase -
  OCU50_RS14310 - 3134651..3135250 (+) 600 WP_060468903.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCU50_RS14315 - 3135390..3136346 (+) 957 WP_060468904.1 DUF2860 domain-containing protein -
  OCU50_RS14320 comM 3136411..3137934 (-) 1524 WP_060468905.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU50_RS14325 ilvG 3138406..3140052 (+) 1647 WP_060468906.1 acetolactate synthase 2 catalytic subunit -
  OCU50_RS14330 ilvM 3140054..3140338 (+) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  OCU50_RS14335 - 3140351..3141319 (+) 969 WP_060468907.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55606.77 Da        Isoelectric Point: 7.9173

>NTDB_id=92427 OCU50_RS14320 WP_060468905.1 3136411..3137934(-) (comM) [Vibrio toranzoniae strain CECT 7225]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSN
EEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKALDSLREPLE
SGEIIISRVAGKTRFPARFQLIGALNPSPTGYYEGNQARVNPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKLRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=92427 OCU50_RS14320 WP_060468905.1 3136411..3137934(-) (comM) [Vibrio toranzoniae strain CECT 7225]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGTGTAGAAGCGCCAGAGGTGACCGTTGAGGTCCATATCAGCAA
TGGAATGCCCGGTTTTACGTTGGTGGGTCTACCTGAAACGACGGTCAAGGAATCCAAAGACCGAGTCAGAAGCGCCATCA
TCAATTCTCGTTTTGAATTCCCATCAAAAAGAATCACGGTCAACCTGGCTCCTGCGGATTTACCTAAGGAGGGAGGGCGC
TTTGACTTGCCAATCGCGCTCGGTATCTTAGTGGCGTCCGATCAGCTGCCTACGTCAAAAATAGCGCAACATGAATTTAT
CGGTGAGTTGGCGTTGTCTGGAGAGTTACGTTCAGTCAAAGGAGTGTTGCCAGCCACATTGGCGGCCGACAGTGTTGAGC
GATGTTTGGTGGTTCCACACCACAACGGTGATCAGGCGGCCTTGGTTGGCAAAGGGGCGCATAAGTCAGCACAAACCTTG
TTGGAAGTTTGCGCGGACATGTGTGGTCAGGCTCAGCTTGGTTTGTATCGAACGGAGCATCATCACGTCGACGTGTCTGA
TAATCGTGATTTACAAGATATTATTGGCCAACAACAAGGCAAGCGCGCCTTAGAGATAGCAGCAGCTGGAAACCATAACT
TGCTTTTCCTTGGTCCTCCTGGGACGGGGAAAACCATGCTCGCTTCACGATTACGCGACTTGTTACCTGAGATGAGTAAT
GAAGAGGCGATGGAAACGGCTTCAGTAGCCTCGTTAACGCAACAAGAGATTAATCAATACAACTGGAAACAAAGGCCATT
TCGTTCGCCTCACCATTCGAGTTCGATGGCGGCCTTAGTGGGTGGGGGCTCTGTCCCTCGTCCTGGAGAGATTTCTTTGG
CGCATAATGGATTGTTGTTTCTGGATGAGATGCCGGAGTTTGAGCGCAAGGCACTCGATTCACTGCGAGAGCCGTTAGAG
TCGGGTGAAATCATTATTTCACGTGTGGCAGGTAAGACTCGCTTTCCTGCTCGCTTTCAGTTGATAGGTGCGCTCAACCC
TAGTCCAACTGGCTATTATGAAGGTAATCAAGCACGAGTTAATCCACAAATCATACTGCGTTATCTCAATCGCTTGTCGG
GACCATTACTTGATCGATTTGATATGTCATTAGAGATCCCTTTGTTACCTAAAGGAATGCTCGCTGAAGGAGGGGATCGT
GGAGAAACGACCCAGGTAGTTAAACTCCGAGTTAAACAAGCTCGTCAGTTGATGCTATCTAGGAATCATAAATCGAATGC
TTTGCTAGGAAGCCGAGAAATTGAAAAATATTGCCCACTTCGACGTGAAGATGCGGAGTTTCTCGAAACCGCGCTGCATC
GGTTGGGTTTATCGATTCGTGCTTATCACCGAATCATTAAGGTTGCACGCACCATTGCCGACCTTGACGGTAACGAGCAG
ATTGAAAAGAAGCATTTATCGGAAGCGCTGGGCTATCGAGCGATGGACCGATTGTTGAAGCAACTCACGGCTCAATCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D6T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

82.84

100

0.828
  comM Vibrio cholerae strain A1552

82.643

100

0.826
  comM Haemophilus influenzae Rd KW20

64.497

100

0.645
  comM Glaesserella parasuis strain SC1401

62.695

100

0.633
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.7

99.803

0.416

Multiple sequence alignment