Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB0R08_RS15200 Genome accession   NZ_CP162609
Coordinates   3296526..3297131 (-) Length   201 a.a.
NCBI ID   WP_093810460.1    Uniprot ID   -
Organism   Streptomyces sp. 1268     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3291526..3302131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS15170 - 3291667..3292533 (-) 867 WP_408992288.1 helix-turn-helix domain-containing protein -
  AB0R08_RS15175 - 3292771..3293202 (+) 432 WP_107410442.1 ATP-binding protein -
  AB0R08_RS15180 - 3293286..3294227 (-) 942 WP_408992289.1 LysR family transcriptional regulator -
  AB0R08_RS15185 - 3294302..3294958 (+) 657 WP_408992290.1 LysE family translocator -
  AB0R08_RS15190 - 3295094..3295567 (-) 474 WP_030713942.1 C40 family peptidase -
  AB0R08_RS15195 - 3296155..3296475 (-) 321 WP_408992291.1 hypothetical protein -
  AB0R08_RS15200 clpP 3296526..3297131 (-) 606 WP_093810460.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB0R08_RS15205 - 3297224..3297541 (+) 318 WP_109199279.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  AB0R08_RS15210 - 3297681..3298679 (-) 999 WP_408992293.1 ABC transporter permease -
  AB0R08_RS15215 - 3298816..3299436 (+) 621 WP_408992294.1 TetR/AcrR family transcriptional regulator -
  AB0R08_RS15220 - 3299575..3299877 (+) 303 WP_010070010.1 urease subunit gamma -
  AB0R08_RS15225 - 3299891..3300202 (+) 312 WP_032778600.1 urease subunit beta -
  AB0R08_RS15230 - 3300195..3301916 (+) 1722 WP_408992295.1 urease subunit alpha -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22021.09 Da        Isoelectric Point: 5.5957

>NTDB_id=924057 AB0R08_RS15200 WP_093810460.1 3296526..3297131(-) (clpP) [Streptomyces sp. 1268]
MIRPAARYVLPEFTERTATGTRTQDPYSKLLSERIVFLGSPIDDTAASDLIAQLMYLEHADPDRPVSLYINSPGGSFQAM
AAVYDTMQFLTCEVETFCLGQAGSYAAALLAAGAKGRRHALPGARVVIQQPALEEPMRGQPSDLEIHARELVRTREMFAA
MLVRHTGRTAEQVTADIERDTILDAKAALAHGLVDHVVENR

Nucleotide


Download         Length: 606 bp        

>NTDB_id=924057 AB0R08_RS15200 WP_093810460.1 3296526..3297131(-) (clpP) [Streptomyces sp. 1268]
ATGATCCGCCCCGCCGCCCGCTACGTCCTTCCCGAGTTCACCGAGCGCACCGCGACCGGGACCCGGACGCAGGACCCGTA
CTCCAAGCTGCTGTCCGAGCGGATCGTCTTTCTCGGGAGCCCGATCGACGACACCGCCGCGAGCGACCTCATCGCCCAGC
TCATGTATCTGGAGCACGCCGATCCGGACCGGCCCGTGTCGCTGTACATCAACTCCCCCGGCGGTTCGTTCCAGGCGATG
GCGGCGGTCTACGACACGATGCAGTTCCTGACCTGCGAGGTGGAGACCTTCTGCCTCGGGCAGGCCGGCTCCTACGCGGC
GGCCCTGCTGGCGGCCGGGGCGAAAGGGCGGCGACATGCACTGCCCGGCGCGCGGGTAGTCATTCAGCAGCCCGCACTGG
AGGAGCCGATGCGGGGCCAGCCGTCCGACCTGGAGATCCACGCGCGCGAACTGGTGCGCACCCGCGAGATGTTCGCGGCC
ATGCTGGTCCGGCACACGGGCCGGACCGCGGAGCAGGTCACCGCCGACATCGAGCGCGACACCATCCTCGACGCGAAGGC
CGCCCTTGCCCACGGGCTGGTCGACCACGTCGTGGAGAACCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.684

94.527

0.413
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.314

95.025

0.383
  clpP Streptococcus mutans UA159

39.896

96.02

0.383
  clpP Lactococcus lactis subsp. cremoris KW2

37.629

96.517

0.363
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

37.629

96.517

0.363