Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VRB37_RS20685 Genome accession   NZ_CP142209
Coordinates   4392720..4393268 (-) Length   182 a.a.
NCBI ID   WP_013200372.1    Uniprot ID   -
Organism   Erwinia billingiae strain W05_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4387720..4398268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB37_RS20675 (VRB37_20675) fhuD 4389283..4390194 (-) 912 WP_338575450.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD -
  VRB37_RS20680 (VRB37_20680) fhuE 4390184..4392424 (-) 2241 WP_338571905.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
  VRB37_RS20685 (VRB37_20685) ssb 4392720..4393268 (-) 549 WP_013200372.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VRB37_RS20690 (VRB37_20690) uvrA 4393573..4396404 (+) 2832 WP_013200371.1 excinuclease ABC subunit UvrA -
  VRB37_RS20695 (VRB37_20695) - 4396779..4397834 (+) 1056 WP_013200370.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19301.29 Da        Isoelectric Point: 5.2456

>NTDB_id=923264 VRB37_RS20685 WP_013200372.1 4392720..4393268(-) (ssb) [Erwinia billingiae strain W05_1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAAEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAGAPAGGGGQGSNNGWGQPQQPQSGGNQFSGGQQARPQAQ
PQQNSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=923264 VRB37_RS20685 WP_013200372.1 4392720..4393268(-) (ssb) [Erwinia billingiae strain W05_1]
ATGGCCAGCAGAGGCGTAAACAAAGTGATCCTGGTGGGCAACCTGGGTCAAGATCCGGAAGTCCGCTACATGCCTAATGG
CGGCGCCGTTGCCAACATCACGCTGGCCACGTCCGAAAGCTGGCGTGACAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AATGGCACCGGGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCGGCAGAGTACCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCGCACTGCAGACCCGTAAATGGACTGACCAGGCTGGCGTTGAGAAGTACACCACCGAAGTGGTCGTTAACGTTGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGCGGTGCAGGCGCACCGGCTGGCGGCGGCGGTCAGGGCAGCAACA
ACGGCTGGGGCCAGCCACAGCAGCCACAGAGCGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCACGTCCGCAGGCTCAG
CCACAGCAGAACAGCGCGCCAGCTAACAACGAGCCACCAATGGACTTCGACGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.565

100

0.703
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.582
  ssb Neisseria meningitidis MC58

44.751

99.451

0.445
  ssb Neisseria gonorrhoeae MS11

44.199

99.451

0.44
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.778

98.901

0.374