Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VRC02_RS21540 Genome accession   NZ_CP142207
Coordinates   4588588..4590108 (+) Length   506 a.a.
NCBI ID   WP_338559232.1    Uniprot ID   -
Organism   Erwinia sp. E_sp_B01_3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4583588..4595108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRC02_RS21520 (VRC02_21515) - 4585151..4586080 (-) 930 WP_338559221.1 branched-chain amino acid transaminase -
  VRC02_RS21525 (VRC02_21520) ilvM 4586099..4586356 (-) 258 WP_338559224.1 acetolactate synthase 2 small subunit -
  VRC02_RS21530 (VRC02_21525) ilvG 4586353..4588002 (-) 1650 WP_338559226.1 acetolactate synthase 2 catalytic subunit -
  VRC02_RS21535 (VRC02_21530) - 4588142..4588240 (-) 99 WP_338559229.1 IlvGEDA operon leader peptide -
  VRC02_RS21540 (VRC02_21535) comM 4588588..4590108 (+) 1521 WP_338559232.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VRC02_RS21545 (VRC02_21540) - 4590134..4590472 (-) 339 WP_338559234.1 DUF413 domain-containing protein -
  VRC02_RS21550 (VRC02_21545) hdfR 4590594..4591418 (+) 825 WP_338559236.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55160.56 Da        Isoelectric Point: 8.3929

>NTDB_id=923224 VRC02_RS21540 WP_338559232.1 4588588..4590108(+) (comM) [Erwinia sp. E_sp_B01_3]
MSLSLAYTRAAIGIEAPLVSVEVHLSNGLPALSLVGLPETTVKEARDRVRSAIINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQIPANKLSQFEFLGELALTGALRGVQGAIPAALAARDAQRQLILSTDNLGDVGLIQNGPGLLSHSL
LEVCSFLTGHCQLAEARCDLPELPWLGGDLNEIIGQQQAKRALEICAAGGHNLLLTGPPGTGKTMLATRLIGLMPPLSDE
EALESAAIASLVSKGVMQKQWRQRPFRAPHHTSSRYALVGGGTLPRPGEISLAHNGVLFLDELPEFDRKTLDALREPLES
GEICISRARAKVTYPARFQLIAAMNPSPTGHYHGTHNRSTPQQTLRYLNKLSGPFLDRFDLSLEVPLLPSGTLSSGIMQS
ESSATVRERVLLARQRQLQRSGVINVRLKPKEIQRDCPLNREDARWLEEVLNQLGLSVRAWQRILKVARTIADLGAEERV
QREHLNEALSYRGIDRLLIHLQKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=923224 VRC02_RS21540 WP_338559232.1 4588588..4590108(+) (comM) [Erwinia sp. E_sp_B01_3]
ATGTCGTTATCCCTGGCCTATACCCGTGCAGCCATCGGCATTGAAGCCCCGCTGGTATCGGTGGAAGTACATTTGAGCAA
TGGTTTGCCAGCACTCTCGCTGGTGGGCCTTCCCGAAACCACAGTGAAGGAAGCACGCGATCGGGTAAGAAGTGCAATTA
TCAACTGCGGCTTTACCTTTCCCGCCAAACGCATCACGGTCAACCTTGCCCCTGCCGATCTGCCCAAAGAAGGTGGCCGG
TATGACTTACCTATCGCAATAGCGATTCTGGCGGCCTCAGAGCAGATCCCAGCGAATAAGCTGAGTCAGTTTGAATTCCT
GGGGGAGTTAGCGTTAACAGGCGCTCTACGGGGCGTACAGGGCGCAATCCCTGCGGCCCTTGCCGCCAGAGACGCCCAGC
GGCAACTTATTCTCTCGACCGATAACCTCGGGGATGTGGGGCTGATCCAAAACGGCCCGGGTCTTCTTAGTCATAGCCTG
TTAGAAGTCTGTAGTTTCCTGACTGGCCACTGTCAGCTAGCGGAAGCCCGGTGCGACCTTCCTGAACTCCCCTGGCTGGG
TGGCGATCTGAATGAGATTATCGGTCAACAACAGGCAAAACGGGCCCTGGAGATTTGCGCGGCAGGCGGCCATAACCTGC
TGCTAACGGGGCCTCCGGGCACCGGCAAGACTATGCTCGCAACCCGGCTCATCGGCTTGATGCCCCCCTTAAGCGATGAG
GAAGCCCTGGAGAGCGCGGCAATAGCCAGCCTTGTCAGTAAGGGGGTAATGCAGAAACAGTGGCGTCAGCGCCCTTTCCG
CGCGCCTCATCACACCTCGTCACGCTATGCACTGGTTGGCGGCGGTACTCTGCCCAGGCCGGGAGAAATTTCTCTGGCGC
ATAACGGAGTGCTCTTTCTTGATGAATTGCCAGAGTTTGATCGTAAGACACTGGATGCATTAAGAGAGCCGCTTGAATCC
GGGGAAATTTGTATCTCACGAGCCAGAGCTAAAGTTACCTATCCCGCCCGATTTCAGCTCATTGCCGCAATGAATCCCAG
CCCTACTGGTCACTATCACGGAACGCATAACCGTAGTACGCCGCAGCAGACGCTGCGTTACCTGAATAAGCTCTCAGGTC
CTTTTCTCGATCGGTTCGATTTGTCTCTTGAAGTCCCCCTTCTTCCTTCGGGCACGCTTAGCAGTGGGATCATGCAGAGT
GAAAGCTCTGCGACCGTCCGGGAAAGAGTTTTACTTGCTCGTCAGCGACAGCTCCAACGCAGTGGGGTGATTAATGTCAG
ATTAAAGCCAAAGGAGATCCAGCGTGATTGCCCTTTAAACAGAGAAGACGCCCGGTGGCTGGAGGAAGTGCTTAATCAGC
TGGGCCTTTCCGTTCGTGCCTGGCAACGTATCCTGAAGGTTGCCCGCACCATTGCGGATTTAGGCGCTGAAGAAAGGGTG
CAACGGGAACATCTGAATGAGGCATTAAGTTATCGTGGTATAGACAGGCTGCTTATCCATTTGCAAAAAAGTCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.846

100

0.628
  comM Glaesserella parasuis strain SC1401

61.933

100

0.621
  comM Vibrio cholerae strain A1552

61.431

99.407

0.611
  comM Vibrio campbellii strain DS40M4

61.155

99.209

0.607
  comM Legionella pneumophila str. Paris

50.6

98.814

0.5
  comM Legionella pneumophila strain ERS1305867

50.6

98.814

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443