Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VRB85_RS20930 Genome accession   NZ_CP142201
Coordinates   4396620..4397171 (-) Length   183 a.a.
NCBI ID   WP_338558902.1    Uniprot ID   -
Organism   Erwinia sp. E_sp_W01_6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4391620..4402171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB85_RS20920 (VRB85_20910) fhuD 4392994..4393836 (-) 843 WP_338564602.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD -
  VRB85_RS20925 (VRB85_20915) fhuE 4393936..4396170 (-) 2235 WP_338558900.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
  VRB85_RS20930 (VRB85_20920) ssb 4396620..4397171 (-) 552 WP_338558902.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VRB85_RS20935 (VRB85_20925) uvrA 4397476..4400307 (+) 2832 WP_338558904.1 excinuclease ABC subunit UvrA -
  VRB85_RS20940 (VRB85_20930) - 4400564..4401616 (+) 1053 WP_338558906.1 NAD(P)-dependent alcohol dehydrogenase -
  VRB85_RS20945 (VRB85_20935) - 4401687..4402019 (-) 333 WP_338558908.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19390.34 Da        Isoelectric Point: 5.2456

>NTDB_id=923123 VRB85_RS20930 WP_338558902.1 4396620..4397171(-) (ssb) [Erwinia sp. E_sp_W01_6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGAGGGASAGGGQGSNNGWGQPQQPQGGAQGGNQFSGGQQSRPQ
QPQQNNAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=923123 VRB85_RS20930 WP_338558902.1 4396620..4397171(-) (ssb) [Erwinia sp. E_sp_W01_6]
ATGGCCAGCAGAGGCGTAAACAAAGTGATCCTGGTGGGCAACCTGGGTCAAGACCCGGAAGTTCGCTATATGCCAAATGG
CGGCGCTGTTGCCAACATTACCCTGGCCACGTCTGAAAGCTGGCGTGACAAGCAGACCGGCGAAACCAAAGAGAAAACTG
AATGGCACCGTGTAGTGCTGTTTGGCAAACTGGCGGAAGTCGCGGGCGAATACCTGAAAAAGGGTTCTCAGGTCTATATT
GAAGGCGCACTGCAAACCCGTAAATGGACTGACCAGGCCGGCGTTGAAAAATACACCACTGAAGTGGTTGTTAACGTTGG
CGGCACCATGCAGATGTTGGGCGGCCGTCAGGGCGCTGGCGGCGGCGCATCAGCCGGTGGCGGCCAGGGCAGCAACAACG
GCTGGGGCCAGCCTCAGCAGCCTCAGGGCGGCGCACAGGGCGGCAACCAGTTCAGCGGTGGTCAGCAATCGCGTCCACAG
CAGCCACAGCAGAACAACGCTCCGGCTAACAATGAACCGCCAATGGATTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.355

100

0.705
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.574
  ssb Neisseria meningitidis MC58

46.739

100

0.47
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.47
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

98.361

0.361