Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU90_RS01640 Genome accession   NZ_AP025508
Coordinates   347025..347591 (+) Length   188 a.a.
NCBI ID   WP_017078845.1    Uniprot ID   A0A1R3FC98
Organism   Vibrio splendidus strain LMG 19031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 342025..352591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS01630 galU 345069..345941 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU90_RS01635 qstR 346099..346746 (-) 648 WP_017084684.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU90_RS01640 ssb 347025..347591 (+) 567 WP_017078845.1 single-stranded DNA-binding protein Machinery gene
  OCU90_RS01645 csrD 347753..349768 (+) 2016 WP_061025071.1 RNase E specificity factor CsrD -
  OCU90_RS01650 - 349771..351213 (+) 1443 WP_061025069.1 hypothetical protein -
  OCU90_RS01655 pilO 351213..351860 (+) 648 WP_061025067.1 type 4a pilus biogenesis protein PilO -
  OCU90_RS01660 - 351853..352185 (+) 333 WP_004735948.1 hypothetical protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20757.89 Da        Isoelectric Point: 5.2358

>NTDB_id=92298 OCU90_RS01640 WP_017078845.1 347025..347591(+) (ssb) [Vibrio splendidus strain LMG 19031]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQAQQQYSAPAQQQ
PKAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=92298 OCU90_RS01640 WP_017078845.1 347025..347591(+) (ssb) [Vibrio splendidus strain LMG 19031]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCCAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAGCCACAGCAGCCACAACAGCAGCAACAAGCACAACAACAATACAGTGCTCCAGCTCAACAGCAG
CCGAAAGCACCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3FC98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.423

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.574
  ssb Neisseria meningitidis MC58

47.568

98.404

0.468
  ssb Neisseria gonorrhoeae MS11

47.568

98.404

0.468

Multiple sequence alignment