Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCU90_RS01635 Genome accession   NZ_AP025508
Coordinates   346099..346746 (-) Length   215 a.a.
NCBI ID   WP_017084684.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 341099..351746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS01625 uvrA 342015..344846 (-) 2832 WP_061025074.1 excinuclease ABC subunit UvrA -
  OCU90_RS01630 galU 345069..345941 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU90_RS01635 qstR 346099..346746 (-) 648 WP_017084684.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU90_RS01640 ssb 347025..347591 (+) 567 WP_017078845.1 single-stranded DNA-binding protein Machinery gene
  OCU90_RS01645 csrD 347753..349768 (+) 2016 WP_061025071.1 RNase E specificity factor CsrD -
  OCU90_RS01650 - 349771..351213 (+) 1443 WP_061025069.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25013.17 Da        Isoelectric Point: 9.7938

>NTDB_id=92297 OCU90_RS01635 WP_017084684.1 346099..346746(-) (qstR) [Vibrio splendidus strain LMG 19031]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDDLMLFDRKQSNRILLVDYKEVPRLINLHPNLPVMWKNHE
IILFNVPKALPTSELITFGVLKGLFYNSEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=92297 OCU90_RS01635 WP_017084684.1 346099..346746(-) (qstR) [Vibrio splendidus strain LMG 19031]
ATGAGAAAATCTCGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCACTTATCTATTATTCTCTACAAAATGACACCGGACGATTTGATGTTATTTGATCGAAAGCAGAGCAACCGAA
TTTTACTGGTTGATTACAAAGAGGTGCCTCGATTAATCAACCTTCATCCAAATCTACCTGTGATGTGGAAAAATCATGAG
ATCATTCTATTCAACGTCCCCAAAGCTCTTCCCACATCGGAGTTGATTACGTTTGGCGTATTAAAAGGTCTCTTTTACAA
CTCTGAAGAGAAAGCCAAAATAGCGAAGGGGCTTGAAGAGGTCATTAATGGAGACAACTGGCTACCTAGAAAAGTGGCAA
GCCAATTACTCTTCTACTATCGAAATATCGTGAGCACCAATACCACCCCTACTAATGTCGACTTAACCATTAGAGAGCTG
CAAGTGATTCGCTGCCTTCAATCAGGCTCATCAAACACTCAAATAGCCGATGACTTGTTTATTAGCGAATTCACCGTCAA
ATCTCATCTTTATCAAATATTTCGTAAGTTAGCCGTTAAGAATAGAGTCCAAGCTATTGCATGGGCAAACCAGAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

56.279

100

0.563
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54
  qstR Vibrio cholerae strain A1552

49.533

99.535

0.493

Multiple sequence alignment