Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV12_RS01460 Genome accession   NZ_AP025506
Coordinates   315659..316213 (+) Length   184 a.a.
NCBI ID   WP_017630755.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 310659..321213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS01445 uvrA 310722..313553 (-) 2832 WP_261885188.1 excinuclease ABC subunit UvrA -
  OCV12_RS01450 galU 313703..314575 (-) 873 WP_017630757.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV12_RS01455 qstR 314733..315380 (-) 648 WP_261885189.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV12_RS01460 ssb 315659..316213 (+) 555 WP_017630755.1 single-stranded DNA-binding protein Machinery gene
  OCV12_RS01465 csrD 316375..318390 (+) 2016 WP_261885190.1 RNase E specificity factor CsrD -
  OCV12_RS01470 - 318393..319835 (+) 1443 WP_261885191.1 MSHA biogenesis protein MshI -
  OCV12_RS01475 pilO 319835..320482 (+) 648 WP_261885192.1 type 4a pilus biogenesis protein PilO -
  OCV12_RS01480 - 320475..320807 (+) 333 WP_239830012.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20303.40 Da        Isoelectric Point: 5.2358

>NTDB_id=92253 OCV12_RS01460 WP_017630755.1 315659..316213(+) (ssb) [Vibrio pomeroyi strain LMG 20537]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQYSAPAQQQKAPQ
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=92253 OCV12_RS01460 WP_017630755.1 315659..316213(+) (ssb) [Vibrio pomeroyi strain LMG 20537]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGCGCGGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGTTAGCTGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGCGGTTGGGGTCAACCACAACAGCCACAACAACAGCAACAATACAGTGCTCCTGCTCAACAGCAGAAAGCACCTCAA
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.622

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.576
  ssb Neisseria meningitidis MC58

46.961

98.37

0.462
  ssb Neisseria gonorrhoeae MS11

46.961

98.37

0.462

Multiple sequence alignment