Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV12_RS01455 Genome accession   NZ_AP025506
Coordinates   314733..315380 (-) Length   215 a.a.
NCBI ID   WP_261885189.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 309733..320380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS01445 uvrA 310722..313553 (-) 2832 WP_261885188.1 excinuclease ABC subunit UvrA -
  OCV12_RS01450 galU 313703..314575 (-) 873 WP_017630757.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV12_RS01455 qstR 314733..315380 (-) 648 WP_261885189.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV12_RS01460 ssb 315659..316213 (+) 555 WP_017630755.1 single-stranded DNA-binding protein Machinery gene
  OCV12_RS01465 csrD 316375..318390 (+) 2016 WP_261885190.1 RNase E specificity factor CsrD -
  OCV12_RS01470 - 318393..319835 (+) 1443 WP_261885191.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25034.18 Da        Isoelectric Point: 9.4544

>NTDB_id=92252 OCV12_RS01455 WP_261885189.1 314733..315380(-) (qstR) [Vibrio pomeroyi strain LMG 20537]
MRKSRYARTLHFLCIDPSDTYLHVKGIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYKEVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTDKKDKIAHGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=92252 OCV12_RS01455 WP_261885189.1 314733..315380(-) (qstR) [Vibrio pomeroyi strain LMG 20537]
ATGAGAAAATCTCGATACGCTCGCACTTTACACTTTCTGTGCATAGACCCGAGTGACACTTACCTACATGTAAAAGGGAT
AGAAAAGCACTTATCCATCATTCTCTACAAAATGACTCCGGACGACTTAATGTTAGTCGACAGAAAGCAGAGTAACCGCA
TCCTACTTGTCGACTATAAGGAGGTACCACAACTACTTATTATCTGTCCCAACCTGACCGTGATGTGGAAAAACCATGAG
ATCATCTTATTCAATGTTCCACAGCAACTGCCGACTTCGGAGCTTCTAACTTATGGAGTGCTGAAAGGTCTCTTTTATAA
CACCGATAAAAAGGACAAGATTGCCCATGGTCTTCAAGAAGTGATTGATGGTGATAACTGGCTACCAAGAAAAGTGACCA
ATCAACTGCTGTTTTACTACCGTAATATGGTCAATACCAACACAACACCAACCAATGTCGACTTAACCATTCGAGAGATT
CAGGTTATTCGTTGCCTTCAATCCGGCTCATCCAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
GTCCCACCTCTATCAAATATTCCGTAAGTTAGCGGTTAAAAATAGAGTCCAAGCCATCGCCTGGGCTAACCAGAACCTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.953

100

0.54
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484

Multiple sequence alignment