Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | vsple_RS01660 | Genome accession | NZ_AP025503 |
| Coordinates | 360085..360633 (+) | Length | 182 a.a. |
| NCBI ID | WP_032552989.1 | Uniprot ID | A0A066URH4 |
| Organism | Vibrio pelagius strain ATCC 25916 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 355085..365633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| vsple_RS01640 | - | 355251..356333 (+) | 1083 | WP_261882492.1 | site-specific integrase | - |
| vsple_RS01645 | - | 356330..358603 (+) | 2274 | WP_261882493.1 | tyrosine-type recombinase/integrase | - |
| vsple_RS01650 | - | 358593..358979 (+) | 387 | WP_261882494.1 | DUF6262 family protein | - |
| vsple_RS01655 | qstR | 359178..359807 (-) | 630 | WP_261882495.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| vsple_RS01660 | ssb | 360085..360633 (+) | 549 | WP_032552989.1 | single-stranded DNA-binding protein | Machinery gene |
| vsple_RS01665 | csrD | 360796..362811 (+) | 2016 | WP_261882496.1 | RNase E specificity factor CsrD | - |
| vsple_RS01670 | - | 362814..364247 (+) | 1434 | WP_261882497.1 | MSHA biogenesis protein MshI | - |
| vsple_RS01675 | pilO | 364250..364897 (+) | 648 | WP_261882498.1 | type 4a pilus biogenesis protein PilO | - |
| vsple_RS01680 | - | 364890..365225 (+) | 336 | WP_261882499.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20004.07 Da Isoelectric Point: 4.9269
>NTDB_id=92214 vsple_RS01660 WP_032552989.1 360085..360633(+) (ssb) [Vibrio pelagius strain ATCC 25916]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGGQQQQGGWGQPQQPQQQQYSAPAQQQAPQQQ
APQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGGQQQQGGWGQPQQPQQQQYSAPAQQQAPQQQ
APQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=92214 vsple_RS01660 WP_032552989.1 360085..360633(+) (ssb) [Vibrio pelagius strain ATCC 25916]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAATCATGGCGTGATAAAGCAACTGGCGAGCAGCGCGAGAAAACAG
AATGGCACCGTGTCGCTCTGTTCGGCAAACTAGCAGAAGTTGCAGGTGAATACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACCCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTTGTGGTTCAAGGCTT
TAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGCGCACCAGCTCAAGGCGGTATGGGTGGTCAACAGCAAC
AAGGTGGTTGGGGTCAACCTCAGCAACCACAACAGCAGCAATACAGTGCACCTGCTCAGCAGCAAGCACCTCAACAGCAA
GCTCCACAACAGGCTCAACCTCAATATAATGAGCCTCCAATGGATTTTGATGACGACATCCCGTTCTAG
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAATCATGGCGTGATAAAGCAACTGGCGAGCAGCGCGAGAAAACAG
AATGGCACCGTGTCGCTCTGTTCGGCAAACTAGCAGAAGTTGCAGGTGAATACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACCCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTTGTGGTTCAAGGCTT
TAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGCGCACCAGCTCAAGGCGGTATGGGTGGTCAACAGCAAC
AAGGTGGTTGGGGTCAACCTCAGCAACCACAACAGCAGCAATACAGTGCACCTGCTCAGCAGCAAGCACCTCAACAGCAA
GCTCCACAACAGGCTCAACCTCAATATAATGAGCCTCCAATGGATTTTGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
82.514 |
100 |
0.83 |
| ssb | Glaesserella parasuis strain SC1401 |
54.974 |
100 |
0.577 |
| ssb | Neisseria meningitidis MC58 |
47.514 |
99.451 |
0.473 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
99.451 |
0.473 |