Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   vsple_RS01655 Genome accession   NZ_AP025503
Coordinates   359178..359807 (-) Length   209 a.a.
NCBI ID   WP_261882495.1    Uniprot ID   -
Organism   Vibrio pelagius strain ATCC 25916     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 354178..364807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vsple_RS01640 - 355251..356333 (+) 1083 WP_261882492.1 site-specific integrase -
  vsple_RS01645 - 356330..358603 (+) 2274 WP_261882493.1 tyrosine-type recombinase/integrase -
  vsple_RS01650 - 358593..358979 (+) 387 WP_261882494.1 DUF6262 family protein -
  vsple_RS01655 qstR 359178..359807 (-) 630 WP_261882495.1 LuxR C-terminal-related transcriptional regulator Regulator
  vsple_RS01660 ssb 360085..360633 (+) 549 WP_032552989.1 single-stranded DNA-binding protein Machinery gene
  vsple_RS01665 csrD 360796..362811 (+) 2016 WP_261882496.1 RNase E specificity factor CsrD -
  vsple_RS01670 - 362814..364247 (+) 1434 WP_261882497.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24448.71 Da        Isoelectric Point: 8.4697

>NTDB_id=92213 vsple_RS01655 WP_261882495.1 359178..359807(-) (qstR) [Vibrio pelagius strain ATCC 25916]
MKVSRYTRTLHFLCSDTEQSHLYINEIEKLLSIPMYRMPPGELMCVNKKQSNRTLLVDYKQLPELFEAFPNLAVLWKNFE
IILFNVEKPLQTQEIIRFGHLKGLFYCSDTKPKIAKGITRIIDGENWLPRKITSQLLFYYRNIVNISTCPITVDLTIREL
QVIRCLQTGASNTQIAEDLFISEFTVKSHLYQIFPDFSPPCWARVLILL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=92213 vsple_RS01655 WP_261882495.1 359178..359807(-) (qstR) [Vibrio pelagius strain ATCC 25916]
ATGAAGGTATCGAGATATACTCGCACCCTACACTTTTTATGCTCAGATACAGAACAGAGTCACCTATACATCAATGAAAT
AGAAAAGTTGCTGTCTATTCCAATGTATAGAATGCCTCCGGGAGAGTTGATGTGTGTTAATAAAAAGCAGAGCAACCGAA
CCCTCTTGGTCGACTACAAGCAACTGCCTGAGCTGTTTGAGGCTTTCCCCAACCTTGCCGTTTTGTGGAAGAACTTTGAA
ATCATTCTGTTCAATGTTGAAAAGCCGTTGCAAACTCAAGAGATCATCCGCTTCGGCCACTTAAAAGGGTTATTCTACTG
CAGCGATACAAAACCAAAGATAGCCAAAGGCATCACTAGGATCATTGATGGTGAGAATTGGCTACCTCGAAAAATCACCA
GTCAGTTGCTGTTCTACTATCGCAATATCGTCAACATCAGCACTTGTCCCATTACGGTCGACTTAACTATCCGTGAATTA
CAAGTGATACGCTGTCTTCAAACTGGCGCTTCGAATACCCAAATCGCAGAAGATCTCTTCATCAGTGAGTTCACAGTCAA
ATCCCATCTTTATCAAATCTTTCCTGACTTCTCCCCGCCCTGTTGGGCAAGGGTTCTTATATTGCTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

51.515

94.737

0.488
  qstR Vibrio parahaemolyticus RIMD 2210633

48.99

94.737

0.464
  qstR Vibrio cholerae strain A1552

44.949

94.737

0.426

Multiple sequence alignment