Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VRB62_RS23575 Genome accession   NZ_CP142152
Coordinates   5282835..5284331 (+) Length   498 a.a.
NCBI ID   WP_338478944.1    Uniprot ID   -
Organism   Pseudomonas trivialis strain P_trivialis_W02_9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5277835..5289331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB62_RS23545 (VRB62_23545) - 5278306..5279001 (+) 696 WP_338478940.1 HAD-IA family hydrolase -
  VRB62_RS23550 (VRB62_23550) sutA 5279145..5279483 (-) 339 WP_338478941.1 transcriptional regulator SutA -
  VRB62_RS23555 (VRB62_23555) - 5279585..5280010 (-) 426 WP_338478942.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VRB62_RS23560 (VRB62_23560) - 5280221..5281558 (-) 1338 WP_057006380.1 ammonium transporter -
  VRB62_RS23565 (VRB62_23565) glnK 5281593..5281931 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  VRB62_RS23570 (VRB62_23570) - 5282355..5282618 (+) 264 WP_338478943.1 accessory factor UbiK family protein -
  VRB62_RS23575 (VRB62_23575) comM 5282835..5284331 (+) 1497 WP_338478944.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VRB62_RS23580 (VRB62_23580) - 5284372..5286348 (-) 1977 WP_338478945.1 methyl-accepting chemotaxis protein -
  VRB62_RS23585 (VRB62_23585) - 5286578..5287954 (+) 1377 WP_338478946.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53576.74 Da        Isoelectric Point: 7.9200

>NTDB_id=922083 VRB62_RS23575 WP_338478944.1 5282835..5284331(+) (comM) [Pseudomonas trivialis strain P_trivialis_W02_9]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYKSDGLQYLNKPYPDLSEVQGQLSAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVARETTALNPIQNE
GDTTANASARVAEARERQQQRQGCANAFLDLPGLREHCTLAKVDERWLETACERLTLSLRAAHRLLKVARTLADLEQQDA
IARHHLQEALQYRPAALT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=922083 VRB62_RS23575 WP_338478944.1 5282835..5284331(+) (comM) [Pseudomonas trivialis strain P_trivialis_W02_9]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTTGGCGTCGAAGCGCCCGCCGTCACTGTCGAGGTGCATATGGCCAA
TGGTTTGCCGTCCCTGACGCTGGTGGGGTTGCCCGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTACGCAGCGCCATTC
TCAATTCGGCCCTGCAATACCCGTCGCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCGCTGGGCATTCTGGCGGCCAGTGTGCAGGTGCCGGCGTTGATGCTCGATGACGTGGAGTGTCT
CGGGGAATTGGCGTTGTCCGGCGAGGTGCGCGCCGTCAAAGGCGTGCTGCCGGCGGCGCTGGCCGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCGTCGGGCTTGAAGGTCATAGCGGTGGATCACCTG
CTACAGGTGGTCGCGCACCTGAATGGGCATGTGCCGATTGAGCCTTACAAGTCAGACGGCTTGCAGTACTTGAACAAGCC
GTATCCGGACCTGAGCGAAGTGCAGGGCCAGCTCTCGGCCAAGCGCGCCCTGCTGATCGCAGCGGCGGGCGCGCATAACC
TGCTGCTCAGCGGCCCTCCCGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCAGGCCTGCTGCCCCCGCTGAGTGAG
CAGGAGGCGCTGGAAGTCGCGGCGATTCAATCGGTCGTCAGCCTGGCGCCCTTGAGCCACTGGCCGCATCGGCCGTTTCG
CCAGCCGCATCACTCCGCATCCGGCCCGGCCCTGGTGGGCGGGGGATCGAAGCCGCAACCGGGGGAAATCACCCTGGCGC
ACCATGGCGTGCTGTTCCTCGATGAATTGCCGGAGTTTGACCGCAAGGTGCTGGAGGTGCTGCGCGAACCCCTGGAGTCA
GGGCACATCGTGATCTCCCGCGCCCGTGACCGCGTGAGTTTCCCCGCGCGCTTTCAACTGGTGGCCGCGATGAACCCGTG
CCCTTGCGGGTACATGGGCGAGCCCAGTGGTCGCTGTCGCTGTACGCCGGAACAGGTTCAGCGCTATCGCAACAAGCTCT
CCGGACCGTTGCTGGACCGGATTGACCTGCACCTGACCGTGGCACGGGAGACCACCGCGCTCAATCCCATTCAAAACGAG
GGTGACACAACAGCCAACGCCTCGGCGCGCGTTGCCGAGGCGCGCGAGCGTCAACAGCAACGCCAGGGGTGTGCAAATGC
CTTTCTGGACCTGCCGGGATTGCGCGAACATTGCACGCTGGCAAAGGTCGACGAGCGCTGGCTGGAGACGGCCTGCGAAC
GGCTGACGTTGTCCCTGCGTGCGGCACACCGGCTGCTCAAGGTGGCGCGCACGCTGGCGGACCTTGAACAACAAGACGCC
ATCGCGCGCCACCATCTGCAAGAGGCACTGCAATACCGCCCGGCGGCACTCACTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.758

99.398

0.554
  comM Glaesserella parasuis strain SC1401

55.09

100

0.554
  comM Vibrio cholerae strain A1552

55.444

99.598

0.552
  comM Haemophilus influenzae Rd KW20

54.2

100

0.544
  comM Legionella pneumophila str. Paris

51.205

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.205

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.472