Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV49_RS16695 Genome accession   NZ_AP025499
Coordinates   3656509..3658032 (-) Length   507 a.a.
NCBI ID   WP_192854253.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3651509..3663032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS16670 - 3651546..3651809 (+) 264 WP_017109664.1 YihD family protein -
  OCV49_RS16675 ccoG 3652109..3653527 (+) 1419 WP_017109665.1 cytochrome c oxidase accessory protein CcoG -
  OCV49_RS16680 - 3653602..3654588 (+) 987 WP_065111984.1 serine/threonine protein kinase -
  OCV49_RS16685 - 3654644..3655243 (+) 600 WP_017109674.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV49_RS16690 - 3655480..3656433 (+) 954 WP_192854254.1 DUF2860 domain-containing protein -
  OCV49_RS16695 comM 3656509..3658032 (-) 1524 WP_192854253.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV49_RS16700 ilvG 3658504..3660150 (+) 1647 WP_065104223.1 acetolactate synthase 2 catalytic subunit -
  OCV49_RS16705 ilvM 3660152..3660436 (+) 285 WP_017111739.1 acetolactate synthase 2 small subunit -
  OCV49_RS16710 - 3660449..3661417 (+) 969 WP_017107538.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55624.82 Da        Isoelectric Point: 7.6369

>NTDB_id=92205 OCV49_RS16695 WP_192854253.1 3656509..3658032(-) (comM) [Vibrio lentus strain LMG 21034]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGVHKSAQTL
LEVCADMCGQAQLGLYRTEQHQVDVIEHRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGSEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=92205 OCV49_RS16695 WP_192854253.1 3656509..3658032(-) (comM) [Vibrio lentus strain LMG 21034]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGTGTAGAGGCGCCAGAAGTGACCGTTGAAGTGCATATAAGCAA
CGGAATGCCCGGTTTTACGCTAGTGGGTTTACCTGAGACTACGGTTAAAGAATCGAAAGACCGAGTGAGGAGTGCCATCA
TTAATTCTCGCTTTGAATTCCCATCGAAAAGAATCACCGTCAATCTTGCTCCTGCCGATTTACCCAAAGAAGGAGGGCGT
TTTGACTTACCAATTGCTCTGGGTATTTTGGTGGCGTCCGATCAACTACCCACATCAAAAATAGCCCAACATGAGTTTAT
TGGTGAGTTGGCGTTATCGGGAGAATTACGCTCAGTCAAAGGAGTTCTACCAGCCACATTAGCGGCGGATAGTGTTGAGC
GATGCTTGGTGGTACCGCATCACAATGGCGATCAGGCAGCCCTAGTTGGTAAGGGGGTACATAAGTCAGCGCAAACGTTG
TTGGAGGTTTGTGCGGATATGTGTGGTCAGGCTCAGCTTGGGTTATACCGGACAGAGCAACATCAGGTCGATGTTATCGA
ACATCGTGATTTGCAGGACATCATTGGTCAACAGCAAGGCAAGCGAGCATTGGAGATCGCTGCTGCTGGCAACCACAACT
TACTTTTTCTTGGCCCACCCGGAACCGGCAAGACTATGTTGGCGTCTCGATTGCGCGACTTACTGCCTGAAATGAGTGAT
GACGAGGCGATGGAAACTGCATCGGTGGCCTCGTTAACGCAGCAAGAGATCAATCAATACAACTGGAAGCAAAGGCCTTT
TCGATCTCCTCATCATTCCAGTTCGATGGCGGCATTGGTCGGTGGTGGTTCCGTACCTCGCCCCGGAGAGATCTCTTTGG
CGCATAACGGATTATTGTTTCTCGATGAGATGCCTGAGTTTGAGCGCAAGGTGCTCGATTCACTGCGAGAGCCGTTGGAA
TCAGGTGAGATCATTATTTCACGCGTGGCAGGCAAGACACGTTTTCCTGCACGCTTTCAGTTGGTCGGAGCCTTGAACCC
AAGCCCGACTGGTTATTACGAAGGCAATCAAGCACGCGCTAATCCGCAGATCATATTGCGCTATCTCAATCGATTATCGG
GGCCATTACTGGATAGGTTCGATATGTCATTGGAGATCCCACTATTGCCCAAAGGGATGTTGGCTGAAGGTGGCGATCGT
GGTGAAACGACTCAAGTGGTAAAACAACGGGTCAAACAAGCGCGCCAGTTGATGCTGTCTAGGAACCATAAATCGAATGC
GCTGTTAGGCAGCCGAGAAATTGAAAAGTATTGCCCATTACGACGCGAGGATGCGGAGTTTTTAGAAACGGCGCTGCATC
GATTGGGTTTATCGATTCGTGCTTATCATCGAATCATCAAGGTTGCGCGAACTATTGCGGACCTAGAGGGTAGTGAGCAG
ATTGAAAAGAAGCATTTATCAGAGGCGCTTGGCTATCGAGCGATGGATCGACTCTTGAAACAACTCTCGGCTCAAGCGGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

83.629

100

0.836
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

65.157

100

0.653
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.406

100

0.424

Multiple sequence alignment