Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV49_RS15045 Genome accession   NZ_AP025499
Coordinates   3342116..3342673 (-) Length   185 a.a.
NCBI ID   WP_102281886.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3337116..3347673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS15035 - 3339049..3340659 (-) 1611 WP_225998557.1 tyrosine-type recombinase/integrase -
  OCV49_RS15040 - 3340675..3341949 (-) 1275 WP_192854155.1 site-specific integrase -
  OCV49_RS15045 ssb 3342116..3342673 (-) 558 WP_102281886.1 single-stranded DNA-binding protein Machinery gene
  OCV49_RS15050 qstR 3342952..3343599 (+) 648 WP_192854156.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV49_RS15055 galU 3343757..3344629 (+) 873 WP_102306656.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20386.49 Da        Isoelectric Point: 5.2358

>NTDB_id=92202 OCV49_RS15045 WP_102281886.1 3342116..3342673(-) (ssb) [Vibrio lentus strain LMG 21034]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNNQQQGGWGQPQQPQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=92202 OCV49_RS15045 WP_102281886.1 3342116..3342673(-) (ssb) [Vibrio lentus strain LMG 21034]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCCCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACTACAGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGCGGTATGGGTAACAACAACCAAC
AGCAAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAGCAGCAACAATACAGTGCTCCAGCTCAACAGCAGCCAAAAGCA
CCTCAACAAGCTCCACAACAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.258

100

0.827
  ssb Glaesserella parasuis strain SC1401

54.639

100

0.573
  ssb Neisseria meningitidis MC58

46.739

99.459

0.465
  ssb Neisseria gonorrhoeae MS11

46.739

99.459

0.465

Multiple sequence alignment