Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV49_RS15050 Genome accession   NZ_AP025499
Coordinates   3342952..3343599 (+) Length   215 a.a.
NCBI ID   WP_192854156.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3337952..3348599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS15035 - 3339049..3340659 (-) 1611 WP_225998557.1 tyrosine-type recombinase/integrase -
  OCV49_RS15040 - 3340675..3341949 (-) 1275 WP_192854155.1 site-specific integrase -
  OCV49_RS15045 ssb 3342116..3342673 (-) 558 WP_102281886.1 single-stranded DNA-binding protein Machinery gene
  OCV49_RS15050 qstR 3342952..3343599 (+) 648 WP_192854156.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV49_RS15055 galU 3343757..3344629 (+) 873 WP_102306656.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV49_RS15060 uvrA 3344851..3347682 (+) 2832 WP_102306657.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24914.98 Da        Isoelectric Point: 9.8409

>NTDB_id=92203 OCV49_RS15050 WP_192854156.1 3342952..3343599(+) (qstR) [Vibrio lentus strain LMG 21034]
MRKSRYARTLHFICIDPSNTYLHVKEIEKFSSLTLFKMTPDDLMLFDRKQSNRILLVDYKEVPQLTNLHPNLPVMWKNHE
IILFNVPKALPTSELITFGVLKGLFYNTEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=92203 OCV49_RS15050 WP_192854156.1 3342952..3343599(+) (qstR) [Vibrio lentus strain LMG 21034]
ATGAGAAAGTCTCGATATGCTCGCACTTTGCATTTTATCTGTATCGATCCGAGTAACACCTATTTGCATGTTAAAGAGAT
AGAAAAATTTTCATCTCTAACCCTTTTCAAGATGACACCAGATGATTTGATGTTATTTGACCGAAAGCAGAGCAACCGAA
TTTTGCTCGTTGATTACAAAGAGGTACCTCAATTAACGAACCTTCATCCAAATCTACCCGTGATGTGGAAAAATCATGAG
ATCATTCTATTCAACGTCCCCAAGGCACTCCCTACATCGGAGTTAATTACATTTGGCGTATTAAAAGGTCTGTTTTACAA
CACTGAAGAGAAAGCCAAAATAGCGAAGGGACTTGAAGAGGTGATCAATGGAGACAATTGGCTACCTAGAAAGGTGGCAA
GCCAATTACTGTTCTACTATCGAAACATCGTGAGCACCAATACAACCCCCACCAATGTTGACTTAACCATTAGAGAGCTG
CAAGTCATTCGTTGCCTTCAATCTGGCTCATCAAACACTCAAATAGCCGATGATTTGTTTATTAGCGAATTCACGGTCAA
ATCTCACCTTTATCAGATATTCCGTAAGCTAGCCGTTAAAAATAGAGTCCAAGCCATTGCATGGGCAAACCAGAATCTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.884

100

0.549
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488

Multiple sequence alignment