Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VPX56_RS01750 Genome accession   NZ_CP142124
Coordinates   364557..365087 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter wuhouensis strain AV1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 359557..370087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPX56_RS01735 (VPX56_01735) aphA 360295..361008 (+) 714 WP_131635393.1 acid phosphatase AphA -
  VPX56_RS01740 (VPX56_01740) - 361126..361479 (+) 354 WP_131635394.1 MmcQ/YjbR family DNA-binding protein -
  VPX56_RS01745 (VPX56_01745) uvrA 361483..364305 (-) 2823 WP_131635395.1 excinuclease ABC subunit UvrA -
  VPX56_RS01750 (VPX56_01750) ssb 364557..365087 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VPX56_RS01755 (VPX56_01755) - 365137..366120 (-) 984 WP_326469503.1 EAL domain-containing protein -
  VPX56_RS01760 (VPX56_01760) - 366133..366894 (-) 762 WP_326469505.1 EAL domain-containing protein -
  VPX56_RS01765 (VPX56_01765) - 366981..368474 (-) 1494 WP_326469507.1 diguanylate cyclase -
  VPX56_RS01770 (VPX56_01770) - 368858..369106 (-) 249 WP_263610721.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=921864 VPX56_RS01750 WP_023310055.1 364557..365087(+) (ssb) [Enterobacter wuhouensis strain AV1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=921864 VPX56_RS01750 WP_023310055.1 364557..365087(+) (ssb) [Enterobacter wuhouensis strain AV1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCACCG
GCCCCGTCCAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364