Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VQ574_RS02725 Genome accession   NZ_CP142122
Coordinates   606211..607707 (-) Length   498 a.a.
NCBI ID   WP_326429500.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain XN05-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 601211..612707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ574_RS02715 (VQ574_02715) - 602435..604072 (+) 1638 WP_326430251.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  VQ574_RS02720 (VQ574_02720) - 604103..606079 (-) 1977 WP_326429499.1 choline BCCT transporter BetT -
  VQ574_RS02725 (VQ574_02725) comM 606211..607707 (-) 1497 WP_326429500.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VQ574_RS02730 (VQ574_02730) - 607744..608004 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  VQ574_RS02735 (VQ574_02735) glnK 608401..608739 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  VQ574_RS02740 (VQ574_02740) - 608778..610094 (+) 1317 WP_326429502.1 ammonium transporter -
  VQ574_RS02745 (VQ574_02745) - 610217..611467 (+) 1251 WP_063539578.1 ammonium transporter -
  VQ574_RS02750 (VQ574_02750) - 611570..611995 (+) 426 WP_152480769.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VQ574_RS02755 (VQ574_02755) sutA 612074..612400 (+) 327 WP_125868765.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53103.93 Da        Isoelectric Point: 8.1454

>NTDB_id=921833 VQ574_RS02725 WP_326429500.1 606211..607707(-) (comM) [Stutzerimonas frequens strain XN05-1]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILSSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPNERLDKLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLEPYVVQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAEARQRQLARQGCANAFLDLAGLRSHCQLGAGDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
ISRQHLAEALQYRPGSQS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=921833 VQ574_RS02725 WP_326429500.1 606211..607707(-) (comM) [Stutzerimonas frequens strain XN05-1]
ATGTCCCTGGCCATCGTTCATAGCCGCGCGCAGATCGGCGTCGAAGCGCCGGCGGTGACCGTCGAAGCCCACCTGGCCAA
CGGTCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTTAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAGCTCCGGCTTCGATTTTCCCGCACGACGCATCACCCTCAACCTCGCCCCTGCCGATCTGCCCAAGGATGGTGGCCGC
TTCGACCTGTCCATCGCCTTGGGCATCCTTGCCGCCAGCGGCCAGCTGCCCAACGAGCGGCTGGACAAACTGGAGTGCCT
CGGCGAGCTGGCCCTGTCCGGCGCCTTGCGCCCTGTGCAGGGCGTGCTGCCGGCCGCCCTTGCCGCACGTGCCGCCGGCC
GTGCACTGCTGGTGCCGCGGGCCAACGCCGAGGAAGCCAGCCTCGCCTCGGGCCTGACCGTCTATGCCGCCGAACACTTG
CTCGAGGTCGCCGCGCACTTCAACGGCGTCACGCCACTCGAGCCCTATGTTGTCCAGGGCCTGCTACGGCAGGTCCAGCC
TTACCCTGACCTGGCCGACGTGCAGGGCCAGCAGGCGGCCAAGCGCGGCCTGCTGATCGCCGCAGCCGGTGCGCACAACC
TGCTGTTTTCCGGGCCACCCGGTACCGGCAAGACGCTGCTGGCCAGCCGTCTGCCCGGCCTGTTGCCACCGCTGGACGAA
CAGGAGGCGCTGGAAGTCGCCGCCATCCATTCGGTGGCCAGCCACAGCCCTCTGGAGCATTGGCCGCAACGCCCATTCCG
CCAGCCCCATCACAGTGCATCAGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGTGAAATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAACTGCCGGAGTTCGATCGCAAGGTACTCGAGGTCCTGCGCGAGCCGCTGGAATCC
GGCCATATCGTCATCGCCCGGGCCCGCGACAAGGTGCGTTTTCCGGCGCGCTTTCAGCTCGTCGCGGCAATGAATCCCTG
CCCCTGTGGCTACCTGGGCGACCCCAACGGACGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCAACCGCCCTCAACGCACCGCCGCAGACC
GGCCAGAGCAGCGCGGTGCTGGCCGCACAAGTCGCCGAGGCACGGCAGCGGCAACTCGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGATCTGGCCGGCCTGCGCAGCCATTGCCAGCTCGGTGCCGGCGACCAGGCCTGGCTGGAACGCGCCTGCGAAC
GCCTGGCGCTGTCGTTGCGCGCCGCGCACCGCCTGCTCAAGGTGGCACGCACCCTCGCCGATCTGGAGCAGGCCGAGCGA
ATCAGCCGTCAGCACCTTGCCGAAGCGCTGCAGTACCGCCCCGGCAGTCAAAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.566

99.398

0.562
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Haemophilus influenzae Rd KW20

55.4

100

0.556
  comM Glaesserella parasuis strain SC1401

55.179

100

0.556
  comM Legionella pneumophila str. Paris

50.791

100

0.516
  comM Legionella pneumophila strain ERS1305867

50.791

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.472