Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VP504_RS11315 Genome accession   NZ_CP142108
Coordinates   2469990..2471516 (-) Length   508 a.a.
NCBI ID   WP_325891259.1    Uniprot ID   -
Organism   Grimontia sp. NTOU-MAR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2464990..2476516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP504_RS11290 (VP504_11290) - 2465184..2465450 (+) 267 WP_325891252.1 YihD family protein -
  VP504_RS11295 (VP504_11295) ccoG 2465727..2467154 (+) 1428 WP_325891254.1 cytochrome c oxidase accessory protein CcoG -
  VP504_RS11300 (VP504_11300) - 2467259..2468245 (+) 987 WP_325891255.1 serine/threonine protein kinase -
  VP504_RS11305 (VP504_11305) - 2468281..2468883 (+) 603 WP_325891256.1 thiol:disulfide interchange protein DsbA/DsbL -
  VP504_RS11310 (VP504_11310) - 2468955..2469869 (-) 915 WP_325891258.1 acyltransferase -
  VP504_RS11315 (VP504_11315) comM 2469990..2471516 (-) 1527 WP_325891259.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VP504_RS11320 (VP504_11320) ilvG 2471972..2473618 (+) 1647 WP_325891261.1 acetolactate synthase 2 catalytic subunit -
  VP504_RS11325 (VP504_11325) ilvM 2473615..2473863 (+) 249 WP_325891263.1 acetolactate synthase 2 small subunit -
  VP504_RS11330 (VP504_11330) - 2473886..2474821 (+) 936 WP_325891265.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54627.72 Da        Isoelectric Point: 8.0329

>NTDB_id=921734 VP504_RS11315 WP_325891259.1 2469990..2471516(-) (comM) [Grimontia sp. NTOU-MAR1]
MNLAIIQSRACVGVEAPQVTVEVHISNGLPAFTLVGLAETTVKEARDRVRSAIVNSGFEFPARRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPMIKLDSHEFAGELALSGQLRAVKGTLPAAVACREANRSLVVPDENGGQVALVGRDIHVSAPDL
ISVCRHLSGQGSLMLKEPEGDEVTPNTAGRCMQDIIGQQQGKRALEIAAAGSHNLLFLGPPGTGKTMLASRMADLLPPMS
DKEALETAAITSLTEKPLHEGNWRKRPFRTPHHSSSMAALVGGGSTPKPGEISLAHNGLLFLDEMPEFERKVLDSLREPL
ESGEVVISRANGKTCFPARFQLIGALNPSPTGHYEGQLARSNPQATLRYLNRLSGPFLDRFDLSIEIPALPRGTLTEGGD
RGEPTEVIKARVERARAVMLKRAGKVNSLLSSREIETYCPLDKADADFLETALHRLGLSIRAYHRIIKVARTIADLSGEA
NIQRGHLAEALGYRSMDRLLKQLTSLAS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=921734 VP504_RS11315 WP_325891259.1 2469990..2471516(-) (comM) [Grimontia sp. NTOU-MAR1]
ATGAATCTTGCCATTATCCAAAGTCGCGCCTGTGTCGGCGTCGAAGCACCACAGGTGACTGTCGAAGTCCATATCAGCAA
TGGGTTACCTGCATTCACGCTAGTTGGCCTAGCCGAAACCACCGTCAAAGAAGCCCGCGACAGGGTGCGCAGCGCGATCG
TGAACTCGGGCTTTGAGTTTCCAGCAAGACGCATCACGGTCAATCTTGCCCCGGCAGACTTACCCAAGGAAGGTGGCAGG
TTTGACTTACCCATCGCCCTTGGTATTTTGGCCGCTTCCGGTCAAATTCCGATGATCAAGCTTGATAGTCATGAATTTGC
CGGAGAGTTGGCCCTTTCCGGTCAACTTCGTGCCGTAAAAGGGACTTTGCCTGCTGCCGTAGCATGCCGTGAAGCGAATA
GAAGCCTAGTGGTACCAGATGAAAACGGCGGACAGGTGGCGCTGGTTGGCAGAGATATTCATGTGTCCGCGCCGGATCTG
ATTTCCGTTTGCCGTCACCTAAGCGGACAGGGTAGCTTGATGCTCAAAGAGCCTGAGGGCGATGAAGTGACGCCGAATAC
AGCTGGACGTTGTATGCAGGATATTATCGGGCAGCAGCAGGGAAAACGTGCGCTGGAGATTGCGGCAGCAGGCTCTCATA
ACCTTTTGTTCCTTGGCCCTCCTGGGACGGGAAAAACCATGTTGGCTTCACGCATGGCTGATCTGTTACCGCCAATGAGT
GACAAAGAAGCACTCGAAACCGCGGCGATCACTTCCCTGACAGAAAAGCCTTTGCACGAAGGTAACTGGCGCAAACGGCC
TTTTCGCACCCCACACCACTCAAGTTCAATGGCTGCATTGGTGGGTGGTGGAAGCACACCAAAACCGGGCGAAATATCGC
TGGCGCACAACGGCTTGCTTTTTCTCGATGAGATGCCCGAGTTCGAACGAAAAGTATTGGATTCATTGCGAGAACCTTTG
GAGTCCGGTGAAGTCGTGATTTCTCGCGCCAACGGTAAAACCTGCTTTCCAGCCCGATTCCAGCTTATCGGTGCACTTAA
CCCCAGCCCGACCGGGCACTATGAAGGTCAGCTGGCGCGATCTAATCCACAGGCGACGCTTCGTTATCTCAACCGCTTAT
CAGGTCCTTTCCTGGACAGGTTTGATCTCTCGATTGAAATCCCAGCCCTACCGCGAGGTACGTTAACTGAAGGCGGCGAC
CGCGGCGAACCGACGGAAGTGATAAAAGCGCGGGTAGAAAGGGCAAGAGCTGTGATGCTAAAAAGGGCAGGTAAAGTTAA
CAGCCTGCTGTCCAGCAGAGAAATTGAAACCTACTGTCCACTCGATAAAGCAGACGCGGACTTTCTGGAAACTGCTTTGC
ATCGATTAGGGCTGTCTATTCGCGCATACCACCGTATCATTAAAGTGGCACGCACTATTGCGGATTTGTCCGGTGAGGCA
AATATCCAACGTGGTCATTTGGCCGAGGCGTTGGGATACCGCTCGATGGATAGGCTTCTTAAACAGCTGACATCACTGGC
GAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

75.05

99.409

0.746
  comM Vibrio campbellii strain DS40M4

74.606

100

0.746
  comM Glaesserella parasuis strain SC1401

63.636

99.606

0.634
  comM Haemophilus influenzae Rd KW20

61.69

100

0.618
  comM Legionella pneumophila str. Paris

48.491

97.835

0.474
  comM Legionella pneumophila strain ERS1305867

48.491

97.835

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.811

100

0.439